| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_1073 |
|---|
| Symbol | |
|---|
| ID | 8410592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halomicrobium mukohataei DSM 12286 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013202 |
|---|
| Strand | + |
|---|
| Start bp | 1022346 |
|---|
| End bp | 1023773 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 645019409 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_003176907 |
|---|
| Protein GI | 257387134 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00231031 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0754239 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCAGC CTGGTTCCGG AGACGAGGCG AGCGGTGTAA ACGTCGACGG GGAGTCACCG
ACGGCACCAC CGGAGCGAGT GACCGACGAG ACGACGGTCC ACGACGACGC CGAACTGGAG
CGGACGATCG GTCTCGTCGG CGGACTCGCC ATCGGGATCG GGACCATGAT CGGCGCGGGG
ATCTTCGTCT TTCCCGGGCT CGCAGCCCAG AACGCCGGGC TGGCGGCCAC GCTCTCTTTT
GCCATCGGCG GCGTCGTCGC GTTGCTGGTG GCGCTGCCGG CCTCGGAGCT GGCCACGGCG
ATGCCCCGAA GCGGAGGGGG CTACTACTTC ATCTCCCGGG GGCTCGGGAC CGCCTACGGT
TCGGTCGTCG GACTGGGGCT GTGGCTCGGG CTGGTGTTTG CCTCGGCGTT TTACCTCGTC
GGTCTCGGCC ACTACGCGAC TGCCGTACTC GCGGAGGTCG GCGTCGCTCT GTCTGTCAGT
CCGGTCGTCC CGATCGGGCT GGTGTTCGCC GTGGCACTGA CCGCACTGAG CATCGGGGGA
ACGGAGAACA CGGCCACGCT CCAGAACGCC GTGGTCGGGA TCTTGCTCGT CGTGTTGACG
GTGTTTCTCT CCTACGGCGT CCTCGACGCC GTCGGCGTCT TCGGCAGGCA GAGCGCGCCA
GAGCAGTTCT TCTCGCAGGG CGTCTTGCCG GTGTTCTCGA CGGCCGCCCT CGTGTTCACG
TCGTACCTGG GCTTCGCACA GGTCGCGACC GTCGCGGGAG AGATCAAGCA ACCGGGGCGG
AACCTCCCGA TCGCGATGGT CGGCTCGGTG CTGGTCGTCA CCGTCTTCTA CGTGGTGACG
ATCTTCGTCG CGACGAGCGC GTTCGGGGCC GACCAGTTGG GCCGATTCGG GGAGACGGCG
ATGGTCGAAG TCGCTCGCGA CTTCCTCGGC GTTCCCGGTG CGGTCGCGAT CCTCTTTGCC
GGCCTGCTGG CGACGTTTTC GAGCGCGAAC GCCTCGATCC TCAGCGCCTC GCGGGCTGTC
TACGCACTGA GCCGGGACGC GCTGTTGCCC CGCAAGGCCA GCGAGATCAA CCTCCGGTAC
GGAACGCCCC ACGTGGCGCT GCTGTCTGCC GGCGGCCCAA TCCTCGTCCT CGTCGCGACC
GGACAGGTGG AGCTCCTGGC GGAAGTCGCC TCGTTCCTCC ACCTCGTCAT GTACGCGTTG
CTGTGTGTTG CACTCCTCGT GTTGCGACGG CGAGACCCGT CCTGGTACAC CCCCAGCTAC
ACGGTCCCCG GCTACCCGGT CGTGCCGGCA CTCGGTGCGG TCGCCAGCGT CGCGCTGATC
GCGTTCATGC AGGTGGCGTC GATCGCGATC GGCCTCGCGA TCATGGCGGT CGCGTACGGC
TGGTACCGGT ACTACGCCGG TGACGTATCC CTCAAAGGAG CTGTCTAA
|
|---|
| Protein sequence | MGQPGSGDEA SGVNVDGESP TAPPERVTDE TTVHDDAELE RTIGLVGGLA IGIGTMIGAG
IFVFPGLAAQ NAGLAATLSF AIGGVVALLV ALPASELATA MPRSGGGYYF ISRGLGTAYG
SVVGLGLWLG LVFASAFYLV GLGHYATAVL AEVGVALSVS PVVPIGLVFA VALTALSIGG
TENTATLQNA VVGILLVVLT VFLSYGVLDA VGVFGRQSAP EQFFSQGVLP VFSTAALVFT
SYLGFAQVAT VAGEIKQPGR NLPIAMVGSV LVVTVFYVVT IFVATSAFGA DQLGRFGETA
MVEVARDFLG VPGAVAILFA GLLATFSSAN ASILSASRAV YALSRDALLP RKASEINLRY
GTPHVALLSA GGPILVLVAT GQVELLAEVA SFLHLVMYAL LCVALLVLRR RDPSWYTPSY
TVPGYPVVPA LGAVASVALI AFMQVASIAI GLAIMAVAYG WYRYYAGDVS LKGAV
|
|---|
| |