Gene Hmuk_0025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHmuk_0025 
Symbol 
ID8409521 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalomicrobium mukohataei DSM 12286 
KingdomArchaea 
Replicon accessionNC_013202 
Strand
Start bp19624 
End bp21171 
Gene Length1548 bp 
Protein Length515 aa 
Translation table11 
GC content69% 
IMG OID645018362 
Product(R)-citramalate synthase 
Protein accessionYP_003175883 
Protein GI257386110 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0119] Isopropylmalate/homocitrate/citramalate synthases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACAGAGA CGACATTGTT CGGGGGTCAC CCGCTGACGC GGGACCTCTC TGATGCTGAC 
GGCGTACAGT TCCTTGACAC CACGCTTCGA GACGGGGAGC AGGCCCCCGG AATCTCGCTC
TCGCCCGACG AGAAGGCACG GATCGCCCGC CAGCTCGACG CGGCCGAGAT CGACGTGATC
GAGGCGGGCA GCGCCTGTAC CGGGCCGGGC GAGCGAAAGA CCATCTCCCG CGTGGCCGAT
CTCGACCTCG ACGCGACGGT GACGAGCTTC TGCCGTGGCA TTCGCAACGA CATCGACCTC
GCGCTGGAGT GTGGCGTCGA CGGGATCAAC CTCGTCGTCC CCGCCAGCGA CCGCCACGTC
GAGGACAAGG TCGGGACCTC TCGGGAGGAC AACGTCGCCT CGACCGTCGA GCTGGTCGAG
TACGCCAAAG CGCAGGGGCT GTGGGTCGAG GTCATCGGCG AGGACGGCTC CCGGGCGGAC
CTGGACTACC TCGAAGAACT GCTCGGTGCC GCCATCGACG CCGGTGCGGA CCGGATCTGC
TGGGCCGATA CCGTCGGTCA CGCGACGCCG GACGGCGCGC TCGAAGCCGT CTCCCGGCTC
TCGAAACTGG GGCCGGTCAG CGCCCACACC CACGACGACC TCGGGCTCGC GGTGATGAAC
GCGCTGGTGG CCGTCGCCGC CGGTGCCGAC ATGGTCCACG GGACCATCAA CGGCATCGGC
GAGCGGGCCG GCAACGTCGC CTTAGAGGAG GTCGCCATCG CGCTCGATCA CGGCTACGGC
GTCGAGACGA TGGACCTGAC CGAGGTGTAC GACCTCGCAC AGCTGGTCGC CAACACGACG
GGGATCCAGC TGGCCCCGAA CAAGGCCGTC GTCGGCCAGA ACGCCTTCAC CCACGAGTCG
GGCATCCACA CCGACGGGAC GCTGAAAGAC GACGCGATGT ACGAGCCCTA CCGGCCCGAG
AAGGTGGGTC GCGAGCGCCG CCTCGCGCTG GGCAAACACG CCGGGCGCGC GGGGGTCGCC
GCCGCGCTCG ACGAGCACGA CATCGACGTG AGCGACGACG AGCTCGCGAC GATCGTCGGG
CGGGTCAAGG AGATCGGCGA CCGCGGCCGA CGGGTCACCG ACGCCGACCT GCTGACCATC
GCCGAGGAGG TCAAAGGCAC CGACCGCGAG CGCCGCGTCG AACTGCTCGA TCTGACGACC
ATCGCCGGTG GCGGCACTCC AACGGCCAGC ATCCGCCTCG CCGTCGACGG CGAGGAACGC
GAGCCCGCCA GCGCCACCGG CTCGGGCCCG GTCGACGCCG CGATGACCGC CATCGAGGAA
GCGCTCGGTA GCTCTGTCAA CTGGAACCTC GACTCCTACC ACGTCGACGC CATCACCGGC
AACACCGACG CCGTCGTCAC CGTCGAGGTC GAGATGTCTC GGGGCGACCG GACGGTGACG
GTCTCCAACA GCGACTCGGA CATCACCCGG GCCTCCGTCC ACGCGATGGT CGACGCCATC
GACCGACTTC TCGCCGACGA GGACGAGCCG GTCGTCGCCG ACGACTGA
 
Protein sequence
MTETTLFGGH PLTRDLSDAD GVQFLDTTLR DGEQAPGISL SPDEKARIAR QLDAAEIDVI 
EAGSACTGPG ERKTISRVAD LDLDATVTSF CRGIRNDIDL ALECGVDGIN LVVPASDRHV
EDKVGTSRED NVASTVELVE YAKAQGLWVE VIGEDGSRAD LDYLEELLGA AIDAGADRIC
WADTVGHATP DGALEAVSRL SKLGPVSAHT HDDLGLAVMN ALVAVAAGAD MVHGTINGIG
ERAGNVALEE VAIALDHGYG VETMDLTEVY DLAQLVANTT GIQLAPNKAV VGQNAFTHES
GIHTDGTLKD DAMYEPYRPE KVGRERRLAL GKHAGRAGVA AALDEHDIDV SDDELATIVG
RVKEIGDRGR RVTDADLLTI AEEVKGTDRE RRVELLDLTT IAGGGTPTAS IRLAVDGEER
EPASATGSGP VDAAMTAIEE ALGSSVNWNL DSYHVDAITG NTDAVVTVEV EMSRGDRTVT
VSNSDSDITR ASVHAMVDAI DRLLADEDEP VVADD