| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_2456 |
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| Symbol | |
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| ID | 8381609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 2633455 |
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| End bp | 2637198 |
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| Gene Length | 3744 bp |
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| Protein Length | 1247 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645005221 |
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| Product | hypothetical protein |
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| Protein accession | YP_003162391 |
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| Protein GI | 256833664 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2251] Predicted nuclease (RecB family) |
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| TIGRFAM ID | [TIGR03491] RecB family nuclease, putative, TM0106 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.320615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0142117 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGACC CGGTGGCCCC GCAGGATTGT CGTCTGCCTC AACAGGTGTT GTCAGTGACG
GAGGTGGTTG CTGCGGCGCG GTGTGAGTTT GGGGCCGTAC GCCGCCGTGA GGTGGCGTTG
GGGTGGCGGG TGCCGCCGTG TGGGGCGCAG TCGGTGGCGC ACTGCACTGA TGATGGGTGT
GACACCCACC ATGATGCGAT GTCGCAGCGG TTGTCGGCGT TAGGTGATGC GTTCGAAGCA
GAAGTTATTG CTGCGTTGAT CGCGGAGCAC GGCTTATGGC AGCCAGGGCT CCCCGGTGGG
GTCTTGCGGG TGGGGGAGTT GCCTGAACGT GACGACCTCA CCGCGGTGAC AGGCATTGTG
CGCGACGCCA TGGACCAGGG GGTCGCTGTG GTGGAACAGT TCCCTGTGCA GGTTGGGTCG
GTTCGCGGGC GTGTTGACTT TTTGGTGCGA CAACCTGATG GGTTGTATGC AGTGTGTGAC
GCGAAGCTTG CACGAACCGC ATCCGCTGAT GCGGTTCTCC AGATCACCGC GTACGCGGAC
ATGCTCACAA CAGCGGGGTT CCCGATCGCC CCCGTGGGGG TGTTGTTCCT GGGCTCTGGG
GTGCAGCAAC AGTACCGGGT CGCCGATATC GCCCCAGTGT GGCGGCGGCT GCACACCCGG
TATGAACGCC TTCTTGCGGG CCGCACCCCA GGCGAGTTGG TGTTGTGGGA GGGTGGTGTC
CCCCCGGCGA CGGTGTCCAC GTGCGGGCGG TGTACAGAGT GCGAACCGCT GGTGACAGTA
AACCGTGACG TGCTGGTCAC GATGGGTGTG ACCACCTCGC ATCGGGCACG GTTGCTGTCT
GCTGGGATCA CCACTGTCGA TGCGCTCGCT GCGTTACACC CTGACCCAAC GGATCCCCGG
GCGCAGGTGA GCGCACAGGA CGCTGCACGG GTGGGGATGT CTGTACGGGC GCTGACTAAG
ATCGCGGCTC AAGCCGCGCT GGTTATCGAG GGGGAGGGGG CACCAGAGCC AGGAGTGCTG
AGGATTGTTG ATACACGCCC GTTCGGGTTG CTGCGTGAAC CTGATGAGGG TGACATTTTC
TTCGACTTTG AGGGCGACCC GCTCTACGCA GAACCGGGGT CACGCGACTG GGGGTTGGAG
TACCTTTTTG GGTGGGTGAC CCGCCAACTC GACGCCGATG GTCAACCCGT ATTCCATGCG
CTGTGGGCGC ACACCCGTGA TGAAGAAAAA ACAGCGTTTA TCACGTTCAT TGACTGGGTG
ACGCAACGAC GGGAACAGTA TCCTGGCATG CACGTGTATC ACTACGCGCC CTATGAAACG
ACCGCTTTGA CGAAACTTGC CGCCCGGCAC GGAACCCGCG AGGCAGAACT TGATAACCTC
CTGCGTGCCG GGGTGTTCGT GGATGTGTAC GCCGTGGTCC GCGGCGGTAT CCGCACCTCA
CAACCGTCAC TATCCATCAA AAAACTGGAA CCTTTTTACG CAGACCGGTT AGGCGCGTTA
CGGGCCGGGG TCACCACAGC CGGTGACTCC ATTGTCGAAT ACGCTGAAGC GCGCGCCGCC
CTTCAGGCCG GTGATCACCA GGGGGCACAG CAGCGCCTCG CCCGGTTGGA GGCGTATAAC
CGGTATGACT GTGCCTCCAC CTACCATCTT GTCCAGTGGC TTATCGAGTT GGCAGATGAC
CACGGCATCG CGTGGCGCAG CGACCCGGCA GCCGGTCCGG CGCAACCGCT TGATGACGCG
CTCGCGCAGA CCACCTCACC TGATGATGCC CCCGATGACA GCGCTGACAG TCCGGTGGGT
GTGGCGCAAC GGTTGGCTGA CCATGTGGAG GTGTTGCGTC ACCGGTGGTT GGCTGCGCGG
GTGACGAACC CGCAGGCACC GGAACCCGAT GTGTTGACGG TTGCCCGGAT GGCGTGGGCG
GGGATCGACT ATAACGCCCG GGAGAAGAAG CAGTATTGGT GGGCTCACTT CGCGAGGCTG
TCTGCCCCTG TTGATGAGTG GTCGGGCAAA GACACGTTTG TTGCGTCACG GGTTGATGTT
GTTGAGGATT GGGCGCGCCC GACGCCGCGG TCTGCGTTGA CGCGGACCTT GGCGTTGTGG
GGTGATCATG ATCCGGCGAG CCCGGTGACG GTGGGTGCGC AGGTGGTGTT GATTTACGAT
GCGCCCGCCC CGGTGGGGTT GAAAACAGCG GACTCTGCGT CACGGGCGTG GAATGGTGCA
CAGTGCCTGG TCACAGAGGT GACGCCGGAT CCTGGGGATC GTCGGCGGGT GGTTGTCACG
GTGACGGAGA AGGTGTCGGC TGGGGTGGAC CGGTTTGACG ATGTTCCCGT GGGGTTTGGT
CCCGGGGCAC CTATTTCGAC GACGGCTATT GATGAACGGC TCCTGGATTT TGCCCGGTCG
GTGTGTGGTG CGTTGGATGC GGCAGGGGAC AACGTGGAGG ATGCGTCGAT TCTTCCGGAT
TCGGTGGCGG TCCGGTTGCT GCGGCGGTTG GGGTCCCGGG TGGATGCCGC GGATGATCAC
AACCGGGCTC GCATGATCGT TGAGTCGTTG CGCAGTGAAT GTCCGGCGGT GGTGGCTGTG
CAAGGCCCGC CTGGGGCGGG GAAAACGTTT GTGGCTTCCC ATGTGATCGC TTCCCTCGCT
CACCAGGGGT GGAATATTGC GGTGGTGGCT CAGTCTCACG CGGTCATCAA TAATGTGCTG
ACCTCGGTGC TGGGCCGGTT TCCAGAACTG GCGGGGCGCA TCGCGAAGAA CACCCCAAAG
AAAACGGACC CTCCGGCTGG GATGGTCCCG GTGACACCAG CCACAATTGG GCAGTTCTTT
GCGGACAACA CCACACAGGG GGTGGTGGTG GGAGCAACAG CATGGCAGTT AGCGAACCCT
GATTTTGCGC CGCCACACGG CTGGGATGTG GTGGTTATTG ATGAAGCAGG TCAATACTCA
CTGGCGAACT CGTTGGCGGT CACGCACGCA GCGGACCGGG TGTTGTTGCT TGGGGACCCC
CAGCAACTCC CGCAGGTGAG CCAGGGCACC CACCCGGAAC CGATCAATGA GTCGGCGCTG
TCATGGCTGG TCGAGGGGCA CCCTATTGTG CCCGAGCATC GGGGGTTCTT TCTTGATCAC
ACCTGGCGGA TGCACCCTGA TCTGACCTAC CCGGTGTCGG TGTTGTCGTA CGACGGTCAA
CTGCAGTCTG TGCCGTTGAC CTCTCAACGT GCGCTTGCCG GGGTGGCGCC GGGTGTGTAT
TCGGTGCCCG TGCCGCACAC CGGGAATGTT GTTGCCAGTG ATGAAGAAGC TCACGCCATC
ACGCAACTGG TTGCATCCCT GTGCGGTAGG TTGTGGCGCG AGCATGATGG GGTGCCTGCC
AGGGCGCTGA CCGCGCAAGA CATCATTGTG GTCGCGCCCT ACAACGCCCA AGTTCACACG
GTACGGGCTG CGCTGGACCG TGCCGGGTAC ACAGACACCC GGGTGGGGAC CGTAGACAAG
TTCCAGGGCC AAGAAGCGCC TGTGGCCATT GTGACTTTGA CCGCGTCTTC AGCTGATGAC
GCACCACGGG GAATCGATTT TGTGCGCAAC CGCAACCGCA TCAACGTGTC CATTTCTCGG
GGGCAACACT CCGCGTTTCT TGTTCACAGC CCGGCTCTCC TCGATGCGTT ACCAGGAAGT
ATCACCGCAT TAGAGGAGCA CGGGGCGTTC TTGCGGTTAG TGGACTCAGC GATCCCTTAC
CACGGTTTCC CGGACCCGCC GTAA
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| Protein sequence | MTDPVAPQDC RLPQQVLSVT EVVAAARCEF GAVRRREVAL GWRVPPCGAQ SVAHCTDDGC
DTHHDAMSQR LSALGDAFEA EVIAALIAEH GLWQPGLPGG VLRVGELPER DDLTAVTGIV
RDAMDQGVAV VEQFPVQVGS VRGRVDFLVR QPDGLYAVCD AKLARTASAD AVLQITAYAD
MLTTAGFPIA PVGVLFLGSG VQQQYRVADI APVWRRLHTR YERLLAGRTP GELVLWEGGV
PPATVSTCGR CTECEPLVTV NRDVLVTMGV TTSHRARLLS AGITTVDALA ALHPDPTDPR
AQVSAQDAAR VGMSVRALTK IAAQAALVIE GEGAPEPGVL RIVDTRPFGL LREPDEGDIF
FDFEGDPLYA EPGSRDWGLE YLFGWVTRQL DADGQPVFHA LWAHTRDEEK TAFITFIDWV
TQRREQYPGM HVYHYAPYET TALTKLAARH GTREAELDNL LRAGVFVDVY AVVRGGIRTS
QPSLSIKKLE PFYADRLGAL RAGVTTAGDS IVEYAEARAA LQAGDHQGAQ QRLARLEAYN
RYDCASTYHL VQWLIELADD HGIAWRSDPA AGPAQPLDDA LAQTTSPDDA PDDSADSPVG
VAQRLADHVE VLRHRWLAAR VTNPQAPEPD VLTVARMAWA GIDYNAREKK QYWWAHFARL
SAPVDEWSGK DTFVASRVDV VEDWARPTPR SALTRTLALW GDHDPASPVT VGAQVVLIYD
APAPVGLKTA DSASRAWNGA QCLVTEVTPD PGDRRRVVVT VTEKVSAGVD RFDDVPVGFG
PGAPISTTAI DERLLDFARS VCGALDAAGD NVEDASILPD SVAVRLLRRL GSRVDAADDH
NRARMIVESL RSECPAVVAV QGPPGAGKTF VASHVIASLA HQGWNIAVVA QSHAVINNVL
TSVLGRFPEL AGRIAKNTPK KTDPPAGMVP VTPATIGQFF ADNTTQGVVV GATAWQLANP
DFAPPHGWDV VVIDEAGQYS LANSLAVTHA ADRVLLLGDP QQLPQVSQGT HPEPINESAL
SWLVEGHPIV PEHRGFFLDH TWRMHPDLTY PVSVLSYDGQ LQSVPLTSQR ALAGVAPGVY
SVPVPHTGNV VASDEEAHAI TQLVASLCGR LWREHDGVPA RALTAQDIIV VAPYNAQVHT
VRAALDRAGY TDTRVGTVDK FQGQEAPVAI VTLTASSADD APRGIDFVRN RNRINVSISR
GQHSAFLVHS PALLDALPGS ITALEEHGAF LRLVDSAIPY HGFPDPP
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