| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1716 |
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| Symbol | |
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| ID | 8381801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 1858983 |
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| End bp | 1861379 |
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| Gene Length | 2397 bp |
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| Protein Length | 798 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645004472 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_003161665 |
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| Protein GI | 256832938 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGCGCG CATGTCAGTG GTCCGTGGAC AATAGTGAGG TGACCACGAA TGACCAAAAC
GCACATGACT CTTCACTAGC ACGTCCGTTC ACTGGCCCGG AGGTGGCTGC TGGTTCTGCC
GCTGCTCGCA TCGTCGACGC TGCCGCAGAG GTGTCGCTAC AGGAGCAGTG GGAGCGACTT
GCTCGTCTGA TACAGCGCTA CCAGTTCGAG TATTACATTC AGGGGGAATC ATCTGTCCCT
GATGCAGATT ATGATGCGCT GCTTGCGGAA CTGGTCGCTG TTGAGGAGCA GTTAGGGGGC
GCGCCTCAGG GTTCTCCAAC CCAGCGAGTG GGGGGAACTT TTTCGACTGA ATTCGAAGAA
GTTGATCACC GTCAGCCCAT GCTGTCGTTG GACAACGCGT TTTCCCTTGA GGAATTACAG
GCCTGGGCTG ATCGTGTTCA TGGTGAACTG TCGGGTGGGG CAGTGTCCTA CTTGTGTGAA
GTGAAAATAG ATGGGTTAGC CGTGTCTCTC ACTTATGAGC GGGGTGAACT CGTCCGGGCA
CTCACTCGTG GTGATGGTCA AACAGGTGAA GACGTCACGC TGAACGTGCA GACAATCCGT
TCGATTCCTC AGCGTTTGGG CGGAGATCCA GCGTTCCACC CGCAGGTTGT GGAGATTCGC
GGGGAAGTCT TCATGAAGGT CGCTGATTTT GCTGATTTGA ACGACTCGCA GGCGCGCCAA
GGCGGGAAAA CCTTCGCGAA CCCACGCAAC GCAGCGGCTG GATCATTGCG GCAAAAAGAT
CCTCGGGTCA CTGCTCAACG ACGGCTGTCT ATGTACGCTC ACGGTATTGG TGCGCTGGAG
TGGGACGGTC AGTCTCCGGT GGACTTGGCT CGCCAATCCG ACGTGTATGC GCTGTACCAA
CAGTGGGGGA TCCCAGTGTC GAGCCACAAT TCAGTGGAAC ACGACCTTGA TGCAGTGACG
AGGAAGATTG AGTACTACCG GGAGAACCGG CACTCCATTG AGCATGAACT TGATGGGTTT
GTCATCAAAG TGGATGAGGT CGCTGCTCAA AAACAGCTGG GTTCAACAAG CCGCGCACCC
CGGTGGGCTA TTGCATTTAA GTACCCACCT GAAGAGGTCA CGACACGGTT GCTTGATATC
CAGGTGAATG TGGGTCGCAC TGGCAGGGTG ACCCCGTTTG GGATGATGGA ACCTGTGCTA
GTTGCAGGGT CAACGGTGAG CATGGCGACG CTCCACAATT TCCATGAGGT GCGCCGTAAG
GATGTGCGTC CCGGGGATAC CGTCATTGTG CGTAAAGCAG GCGATGTGAT TCCTGAGATC
CTGGGCGCAG TGGAGTCACT GCGACCTGAT GGGTTACCTC AGTGGGAACC GCCCACGCAT
TGTCCGTCGT GTGGCACCGA GATTCGTGAA GCGAAGGAGG GCGACAAAGA CCTTCGCTGT
CCGAACGCGC AGTCGTGTCC GTCGCAGTTG CGAGAACGCG TCTTTGCCTT AGCGTCCCGT
GGTGCGTTTG ATATAGAAGC GCTCGGATGG GAATCTGCTG TGGCGTTGTG CGATCCGGAG
AGCTCTCGCC CAGTGGGGCC CGACGCTCCA CAGCTTGACG GGCCGCCTCT TACCCCGGTT
CTCACCAGCG AGGCGCACAT TTTTGACCTT GCAGATGAGA ACAGTTCGTT GACGCGCAGC
CTCAAGGATG TTGTGGTGTG GCGGGAGCGG AAATTGAAGT CTGGCACCCG CTGGGAGCTA
GTTCCCTACT TTTACACCCG GGCAACGGCT TCGAAGTCTT CGGTTCCAAC TGCGACGACA
GTCAAGCTGT TTGAGGAGGT ACAGAAGGCA AAGAGCCAGC CATTGTGGCG GGTGTTGGTG
GCATTGTCGA TTCGCCATGT GGGGCCTACC GCGGCGCGAG CTCTTGCCAC AGAGTTTGGT
TCGATGGATC GCATCCGAGC CGCTTCTGTG TCGGAACTCG CCGCAGTTGA CGGTGTGGGC
TCCACCATTG CGGAGTCTGT CGTTGAGTGG TTCCGTGAGG TGGACGGCAA TCAGTGGCGT
CCCGCGATTG TCGCTGCGTG GGCGAAAGCT GGGGTGTCTA TGGAGGATAT TCCCGACGAG
TCTGTGCAAC GCACGTTGGA AGGAATCACT GTTGTTGTGA CCGGTGGGTT GGAGAACTTC
ACTCGTGATG GGGTGAAGGA AGCGATTGTG GCACGGGGCG GCAAAGCGTC CGGGTCGGTG
TCTAAGAAAA CCGATTTTGT GGTTGTGGGC GCAAATGCGG GGTCGAAGGA GACGAAGGCG
CGAGAGCTTG GCTTGCGAAT TCTGAATGAA GAAGAGTTCA CCCGGTTGCT TGCCGGGGGT
CCTGATGCGG TTAATGCGAG TCACAGTAGT GAGTCTGTCT CAGAAGTTTC GGACTAG
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| Protein sequence | MARACQWSVD NSEVTTNDQN AHDSSLARPF TGPEVAAGSA AARIVDAAAE VSLQEQWERL
ARLIQRYQFE YYIQGESSVP DADYDALLAE LVAVEEQLGG APQGSPTQRV GGTFSTEFEE
VDHRQPMLSL DNAFSLEELQ AWADRVHGEL SGGAVSYLCE VKIDGLAVSL TYERGELVRA
LTRGDGQTGE DVTLNVQTIR SIPQRLGGDP AFHPQVVEIR GEVFMKVADF ADLNDSQARQ
GGKTFANPRN AAAGSLRQKD PRVTAQRRLS MYAHGIGALE WDGQSPVDLA RQSDVYALYQ
QWGIPVSSHN SVEHDLDAVT RKIEYYRENR HSIEHELDGF VIKVDEVAAQ KQLGSTSRAP
RWAIAFKYPP EEVTTRLLDI QVNVGRTGRV TPFGMMEPVL VAGSTVSMAT LHNFHEVRRK
DVRPGDTVIV RKAGDVIPEI LGAVESLRPD GLPQWEPPTH CPSCGTEIRE AKEGDKDLRC
PNAQSCPSQL RERVFALASR GAFDIEALGW ESAVALCDPE SSRPVGPDAP QLDGPPLTPV
LTSEAHIFDL ADENSSLTRS LKDVVVWRER KLKSGTRWEL VPYFYTRATA SKSSVPTATT
VKLFEEVQKA KSQPLWRVLV ALSIRHVGPT AARALATEFG SMDRIRAASV SELAAVDGVG
STIAESVVEW FREVDGNQWR PAIVAAWAKA GVSMEDIPDE SVQRTLEGIT VVVTGGLENF
TRDGVKEAIV ARGGKASGSV SKKTDFVVVG ANAGSKETKA RELGLRILNE EEFTRLLAGG
PDAVNASHSS ESVSEVSD
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