Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_1623 |
Symbol | |
ID | 8380792 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | + |
Start bp | 1750208 |
End bp | 1752622 |
Gene Length | 2415 bp |
Protein Length | 804 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 645004373 |
Product | glycoside hydrolase family 43 |
Protein accession | YP_003161574 |
Protein GI | 256832847 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3507] Beta-xylosidase |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0299424 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.680345 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAACCAT CACGTAAGAC GGCGGGTATC GCCGCCTCGA TGGCAGGGAT TCTCACTGCT ACTGTCCTTG CTGTGGGTGT TTCATTACCC GCACACGCCA AGAAAACGCC ACACGACACC CCGACGTTCA CCGACGTCAC TGTGCACGAC CCGTCCGTTA TCACAGACGG CGACGACATT TGGGTGTTCG GTTCACACGG CGCATCAGCC CACACCCAAG ATCTCCTCAA CTGGACGCAA CACACAGTTG ACCTGGCTCA GGACCGCGAT AACCCCCTCT TTGAGGACAT CTACAACGAA CTCAAAGAAA CATTCGAGTG GGCGCAGTCC GATACCTTGT GGGCTTCTGA CGCCATCCAA CTACCCAACG GCAAATTCGC GATGTACTAC AACGCCTGCA AAGGCGACTC ACCCAGGTCT GCACTCGGGT TAGCAATCGC AGACACAGTG GATGGCCCCT ACAAAGACCA AGGCATCCTG CTGAAATCGG GAATGTGGGA TGAGGAATCT GAAAATCCCG GCGAGATCTA TGACGCGTTG ATCCACCCCA ACGCTGTTGA CCCTGACGCG TTCTACGACG AAGACGGCAC CCTGTGGATG GTGTACGGCT CCTACTCGGG TGGAATCTTC ATCCTTGAAA TGGACAAAGA CACTGGCCTG CCCCTACCTG ACCAGGGTTA CGGTCAGCAC CTCCTCGGTG GAAACCACTC ACGTATCGAA GCGCCAGCCA TTCAATACAA CAAGGACACC GGCTACTACT ACCTGTACAC GTCATTCGGT GGATTAGACG CCACCGGTGG GTACAACATG CGTGTAGCCC GCTCCAAAAA CCCTGATGGT CCCTACGTGG ACGCTCAAGG CAACGACATG TCCCAGGTCA AGTCTGATCC GTCTCAACCA CTCTTTGATG ACGCATCCAT TGAACCGTAT GGTGTCAAAC TCATGGGCTC GCACCTTTTC ACTCGTGAGC TTGGCGACCC AGGTGAGGGC GCCGGGGTTG GTTACATCTC TCCCGGCCAC AATACCTGGT ATGAAGATCC TGACACCGGG AAAATGTTCC TGATCTTCCA CTCCCGTTTC CCAGGCAACG GCGAAATGCA CCAAGTTCGG GTACAACAGA TGTGGTTCAC CCCTGATGGG TGGCCGGTAC TGTCCCCCAT GCGGTACGCC GGGGAAACAG CAGGGAGCGT GAAGAAAAAC GAGATTGCCG GTGATTGGCA ACTCATCAAC ATGGGCACCA GCATCAACAC CACCCCCATT GAATCCGAGA CAGTGCGCCT AGAGAAAAAC GGGACCGTCA CCACCACTGA ACAAGGCGTG ACAAAACCAA CAACAACGCG CATCGGAAAG TGGTCCCTGA AAGGGAAAAA CACCGCAACG ATCACTGTGA ACAACACCAC GTACACTGGG TTGTTCACCC CAATATGGGA CCCGCAATAC CAACAGTGGT CCGTTGGTCT GAGCGCGTTG TCCAAGGACG GCATCACACT CACCGGGCGT CAGGTTGAGG TCCTCACCGG CGCTCAGGCT GTGAAAGCAG TTGCGAAAGC AATTGACCTG GGTAACACCA AGAACGTCAC CGCGAACCTG ACCCTCCCTA CCAGTGGAAC CGGTGGAACC ACCATCACCT GGTGGTCCTC CAATGACGCT GTCATTGATG GAACGGGGAA GATCACGCGC CCAGCCGTGG GTGAGGAGCC GACGACCGCG AAACTCTACG CACGGATCAC CAACGGCAAG AAAACCAAGA AAATGACGTA CACGATCGTT GTTGCACCAC GTGTTGCCGC AACCCTCGAT GCGTCCTACA GCTTCGATGG TGACCTCACT GACACCACGG GGGCAGGTGA AGCAGCCACA ACAACGGGTG CTCGCATTGA CACAACCGGT GGTGAACCAG CGTTCACGGA CGGTGTGTCC GGTCAAGCGC TCACATTGGA CGGTACAAAC GGTGTGCGGC TCCCCGATGG GCTCATTGAC TCCCACTCAT ACTCTGTGGC GATGTGGTTG AAACCCACTG AACTCACCCA GTTCACAACA GCGTTCTTTG GCGCAGCCAC GAGCGAATCA TGGGTTTCTC TTGTGCCCTC AGGACACGAT GGTGTGAATG GGCGAACCAT GCTGTGGTCT GGAACTGCAT GGTATGACGC CGACTCGGGC ACACAGATCC CCACCGGCCA GTGGAGTCAC GTGGCGTTCG TTGTTGACGG TGGAGGTGTA GAACTCTATA TCAATGGGGA ACGCACTTTT GACGGAACCG GGTTTCCTGA TGTGTTTACC GCAAATGACG GCACCTTCGG GGTGGGTGTG AACTGGTGGG ACACCCCATT CACGGGTGCT GTGGATGAAC TCAACATCTA TTCGTCCGCG CTCACCGCGC AGGATGTCCG CGATCTCGCC ACGGTTGGTC AGTAA
|
Protein sequence | MQPSRKTAGI AASMAGILTA TVLAVGVSLP AHAKKTPHDT PTFTDVTVHD PSVITDGDDI WVFGSHGASA HTQDLLNWTQ HTVDLAQDRD NPLFEDIYNE LKETFEWAQS DTLWASDAIQ LPNGKFAMYY NACKGDSPRS ALGLAIADTV DGPYKDQGIL LKSGMWDEES ENPGEIYDAL IHPNAVDPDA FYDEDGTLWM VYGSYSGGIF ILEMDKDTGL PLPDQGYGQH LLGGNHSRIE APAIQYNKDT GYYYLYTSFG GLDATGGYNM RVARSKNPDG PYVDAQGNDM SQVKSDPSQP LFDDASIEPY GVKLMGSHLF TRELGDPGEG AGVGYISPGH NTWYEDPDTG KMFLIFHSRF PGNGEMHQVR VQQMWFTPDG WPVLSPMRYA GETAGSVKKN EIAGDWQLIN MGTSINTTPI ESETVRLEKN GTVTTTEQGV TKPTTTRIGK WSLKGKNTAT ITVNNTTYTG LFTPIWDPQY QQWSVGLSAL SKDGITLTGR QVEVLTGAQA VKAVAKAIDL GNTKNVTANL TLPTSGTGGT TITWWSSNDA VIDGTGKITR PAVGEEPTTA KLYARITNGK KTKKMTYTIV VAPRVAATLD ASYSFDGDLT DTTGAGEAAT TTGARIDTTG GEPAFTDGVS GQALTLDGTN GVRLPDGLID SHSYSVAMWL KPTELTQFTT AFFGAATSES WVSLVPSGHD GVNGRTMLWS GTAWYDADSG TQIPTGQWSH VAFVVDGGGV ELYINGERTF DGTGFPDVFT ANDGTFGVGV NWWDTPFTGA VDELNIYSSA LTAQDVRDLA TVGQ
|
| |