| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1623 |
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| Symbol | |
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| ID | 8380792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | + |
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| Start bp | 1750208 |
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| End bp | 1752622 |
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| Gene Length | 2415 bp |
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| Protein Length | 804 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645004373 |
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| Product | glycoside hydrolase family 43 |
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| Protein accession | YP_003161574 |
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| Protein GI | 256832847 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3507] Beta-xylosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0299424 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.680345 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACCAT CACGTAAGAC GGCGGGTATC GCCGCCTCGA TGGCAGGGAT TCTCACTGCT
ACTGTCCTTG CTGTGGGTGT TTCATTACCC GCACACGCCA AGAAAACGCC ACACGACACC
CCGACGTTCA CCGACGTCAC TGTGCACGAC CCGTCCGTTA TCACAGACGG CGACGACATT
TGGGTGTTCG GTTCACACGG CGCATCAGCC CACACCCAAG ATCTCCTCAA CTGGACGCAA
CACACAGTTG ACCTGGCTCA GGACCGCGAT AACCCCCTCT TTGAGGACAT CTACAACGAA
CTCAAAGAAA CATTCGAGTG GGCGCAGTCC GATACCTTGT GGGCTTCTGA CGCCATCCAA
CTACCCAACG GCAAATTCGC GATGTACTAC AACGCCTGCA AAGGCGACTC ACCCAGGTCT
GCACTCGGGT TAGCAATCGC AGACACAGTG GATGGCCCCT ACAAAGACCA AGGCATCCTG
CTGAAATCGG GAATGTGGGA TGAGGAATCT GAAAATCCCG GCGAGATCTA TGACGCGTTG
ATCCACCCCA ACGCTGTTGA CCCTGACGCG TTCTACGACG AAGACGGCAC CCTGTGGATG
GTGTACGGCT CCTACTCGGG TGGAATCTTC ATCCTTGAAA TGGACAAAGA CACTGGCCTG
CCCCTACCTG ACCAGGGTTA CGGTCAGCAC CTCCTCGGTG GAAACCACTC ACGTATCGAA
GCGCCAGCCA TTCAATACAA CAAGGACACC GGCTACTACT ACCTGTACAC GTCATTCGGT
GGATTAGACG CCACCGGTGG GTACAACATG CGTGTAGCCC GCTCCAAAAA CCCTGATGGT
CCCTACGTGG ACGCTCAAGG CAACGACATG TCCCAGGTCA AGTCTGATCC GTCTCAACCA
CTCTTTGATG ACGCATCCAT TGAACCGTAT GGTGTCAAAC TCATGGGCTC GCACCTTTTC
ACTCGTGAGC TTGGCGACCC AGGTGAGGGC GCCGGGGTTG GTTACATCTC TCCCGGCCAC
AATACCTGGT ATGAAGATCC TGACACCGGG AAAATGTTCC TGATCTTCCA CTCCCGTTTC
CCAGGCAACG GCGAAATGCA CCAAGTTCGG GTACAACAGA TGTGGTTCAC CCCTGATGGG
TGGCCGGTAC TGTCCCCCAT GCGGTACGCC GGGGAAACAG CAGGGAGCGT GAAGAAAAAC
GAGATTGCCG GTGATTGGCA ACTCATCAAC ATGGGCACCA GCATCAACAC CACCCCCATT
GAATCCGAGA CAGTGCGCCT AGAGAAAAAC GGGACCGTCA CCACCACTGA ACAAGGCGTG
ACAAAACCAA CAACAACGCG CATCGGAAAG TGGTCCCTGA AAGGGAAAAA CACCGCAACG
ATCACTGTGA ACAACACCAC GTACACTGGG TTGTTCACCC CAATATGGGA CCCGCAATAC
CAACAGTGGT CCGTTGGTCT GAGCGCGTTG TCCAAGGACG GCATCACACT CACCGGGCGT
CAGGTTGAGG TCCTCACCGG CGCTCAGGCT GTGAAAGCAG TTGCGAAAGC AATTGACCTG
GGTAACACCA AGAACGTCAC CGCGAACCTG ACCCTCCCTA CCAGTGGAAC CGGTGGAACC
ACCATCACCT GGTGGTCCTC CAATGACGCT GTCATTGATG GAACGGGGAA GATCACGCGC
CCAGCCGTGG GTGAGGAGCC GACGACCGCG AAACTCTACG CACGGATCAC CAACGGCAAG
AAAACCAAGA AAATGACGTA CACGATCGTT GTTGCACCAC GTGTTGCCGC AACCCTCGAT
GCGTCCTACA GCTTCGATGG TGACCTCACT GACACCACGG GGGCAGGTGA AGCAGCCACA
ACAACGGGTG CTCGCATTGA CACAACCGGT GGTGAACCAG CGTTCACGGA CGGTGTGTCC
GGTCAAGCGC TCACATTGGA CGGTACAAAC GGTGTGCGGC TCCCCGATGG GCTCATTGAC
TCCCACTCAT ACTCTGTGGC GATGTGGTTG AAACCCACTG AACTCACCCA GTTCACAACA
GCGTTCTTTG GCGCAGCCAC GAGCGAATCA TGGGTTTCTC TTGTGCCCTC AGGACACGAT
GGTGTGAATG GGCGAACCAT GCTGTGGTCT GGAACTGCAT GGTATGACGC CGACTCGGGC
ACACAGATCC CCACCGGCCA GTGGAGTCAC GTGGCGTTCG TTGTTGACGG TGGAGGTGTA
GAACTCTATA TCAATGGGGA ACGCACTTTT GACGGAACCG GGTTTCCTGA TGTGTTTACC
GCAAATGACG GCACCTTCGG GGTGGGTGTG AACTGGTGGG ACACCCCATT CACGGGTGCT
GTGGATGAAC TCAACATCTA TTCGTCCGCG CTCACCGCGC AGGATGTCCG CGATCTCGCC
ACGGTTGGTC AGTAA
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| Protein sequence | MQPSRKTAGI AASMAGILTA TVLAVGVSLP AHAKKTPHDT PTFTDVTVHD PSVITDGDDI
WVFGSHGASA HTQDLLNWTQ HTVDLAQDRD NPLFEDIYNE LKETFEWAQS DTLWASDAIQ
LPNGKFAMYY NACKGDSPRS ALGLAIADTV DGPYKDQGIL LKSGMWDEES ENPGEIYDAL
IHPNAVDPDA FYDEDGTLWM VYGSYSGGIF ILEMDKDTGL PLPDQGYGQH LLGGNHSRIE
APAIQYNKDT GYYYLYTSFG GLDATGGYNM RVARSKNPDG PYVDAQGNDM SQVKSDPSQP
LFDDASIEPY GVKLMGSHLF TRELGDPGEG AGVGYISPGH NTWYEDPDTG KMFLIFHSRF
PGNGEMHQVR VQQMWFTPDG WPVLSPMRYA GETAGSVKKN EIAGDWQLIN MGTSINTTPI
ESETVRLEKN GTVTTTEQGV TKPTTTRIGK WSLKGKNTAT ITVNNTTYTG LFTPIWDPQY
QQWSVGLSAL SKDGITLTGR QVEVLTGAQA VKAVAKAIDL GNTKNVTANL TLPTSGTGGT
TITWWSSNDA VIDGTGKITR PAVGEEPTTA KLYARITNGK KTKKMTYTIV VAPRVAATLD
ASYSFDGDLT DTTGAGEAAT TTGARIDTTG GEPAFTDGVS GQALTLDGTN GVRLPDGLID
SHSYSVAMWL KPTELTQFTT AFFGAATSES WVSLVPSGHD GVNGRTMLWS GTAWYDADSG
TQIPTGQWSH VAFVVDGGGV ELYINGERTF DGTGFPDVFT ANDGTFGVGV NWWDTPFTGA
VDELNIYSSA LTAQDVRDLA TVGQ
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