| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1612 |
|---|
| Symbol | |
|---|
| ID | 8380781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 1736735 |
|---|
| End bp | 1738906 |
|---|
| Gene Length | 2172 bp |
|---|
| Protein Length | 723 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 645004362 |
|---|
| Product | LPXTG-motif cell wall anchor domain protein |
|---|
| Protein accession | YP_003161563 |
|---|
| Protein GI | 256832836 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACACGA ACCGAGCATC TTCGCCCACC AGACTTGCTG GGCTCTTTGC GCTTCTCATC
GCACTCGTTG CGACACTAAC CCTTGTCCCG ATCACGACAT CACAGGCGAC CTCCTTCGAT
CGTGGCTACC CAAAAATGGG TTCCCAGAGC GAAGCACAAG CAGGTTTCTA TGTGAAGTCC
CACCGCAGCA TAATCCGCAC CACACTGTTC CCGGTGCAAA CCAAAAAGGG AGCGAAATCT
GACCTCTTCG CTTACTGCGT GGAACTGTCA GTTGGCGCCT ACTACGGCAT TGACCTCAAC
GTTGATGGCT GGAGCAAGTT CCCTGGACAA AACAACTTCG CTAAAGATGA CCTGGTGAAG
GAAAAGGCAG CGTGGATTGC CTACAACTCC TACCCCAACA AACCCCTTGA CGAACTCATC
GCGAAAACAG GTCTTTCGGG CCTAACTGCT GAGGAAGCGA TCACCGCGAC CCAGGCCGCG
ATCTGGACCC TGACAGACGG CGCACCAGCA TCAAGCAATT TCGAATACAA CGGGTTTATC
TTGTCTAACA ACAAGGCCCC GTCACGCGAC CAAAAGCACC GCGTGGACTC CCTGTTCTCC
TACCTTCTTG GTGAAGCAAA CACCGGCCGC CCAGAAGTAT TGGAACCCAA CCTGTCTGTG
ACCGTCGGAA ACGCTGAGGG CAATGCGGGC AACCGTGTGG GACCCATCGC GATCACCGCA
TCGGAAGACA CCGTCACCGT AGTGACAGAT TCTCCCTACC CACTCGTTGA CGCTGACGGC
AACGCCGTTG ATCTCAACGC CGTGCCTGGA AACGCTGTGC TCTACGTGGA CGTTCCCGCA
GACGCACAAC CTGGTTCCGC CAACGTGAGC GTGGAACTGA CCGGGTCAAA GTTCACCGGA
CAACTCATTA CCGGCAAATA CAAGCGCACC CAGACACTGA TCATCTCCGA CTCCGAAAAA
GTCACTGAGG CAGCAACCGG TGTTGTGACC TGGGGGGCAG GCCCAAGCCT TGCGACCTCA
GCATCAAACG AAGAAACCGG TGGCAAGTTT GTTGACGGGC TTGGTCCAGC AACAATCGTT
GACGTCGTGT CCTACACAGG TCTGACCTCG GGGCAGGAAT ACACAGTCAC AGGTGAACTG
ATGGTCCGTG ACAACGGTGA AGCGATCTCC ACCGGAATCA CAGCATCGCA AACCTTCACC
CCTGACGCTG CAGACGGCTC CGTGACAGTC ACGTTCGACA TCACCGATGC TGATCTTGCT
GGAAAAACCG TTGTCGCGTT TGAGGTTGTC ACACAAGGCA AGAACGTTGT GGCAACACAT
GAAGACATCC TTGATGAGAA CCAAACGGTC TATAGCCCGC TGGTCGAAAC TGATGCTTAC
GACCTCACTG ACTCTGACCA GATCCTCTCC GTTGAGGGTG GCACACTGCG TGACCGTATC
GAGTACTCCG GTGTTCAAAC CGGACAAACA TACATCGTGC GCGGTGAAGT CATGGACAAA
GACACCGGCG AAAGCACCGG CATCACTGGG GAAACCGCCT TCCAAGCTGG CGCTGAGTCA
GGTGTTGTGG ACGTCGACTT CGAGATCCCA GCAGACCATG CAGGTAAAAC CCTCGTCGTC
TTCGAACGTC TCTACGTTGT CACCGGTGAC GCAGGAAACA CCACAGAAGA ACTCATTGCA
GTGCACGAAG ACATCAATGA GGAACGCCAA ACGGTGACTG TCACAGGTGA GGTACCGGAG
GAAACCCCAA CGCCTGAAGA ACCAGAGACC CCTGGTAAGG ATGTTGATCT TCCCGAAACT
CCAGAACCTG AGCAACCCGG AGGGGAAACC CCTGAACCTG AGCAGCCTGG TGAGGAAACA
CCAGCCCCTG AACAGCCAGG TGAAGAAACA CCAGCACCTG AAGAGGGAGT GGGTGGCGAA
ATCGTGGACA ACCCCGGGCT CGTCATCACT GACGACGACG TTCAGGGTGA GGTTGTGGAC
AACCCTGCCA ACGATCAAGA CACTGTTGCA GGTCCAGAAC TCGCTGACAC CGGGTTCAAC
CTCACCAGCA CCGTAGTCAT CGCGGCACTT GTGCTGCTGC TCCTCGGTGG CGGTCTGGTT
GCCTACCAGC GCTTCTCGCG CCGGGAACTC CAAGGAGCGG AAGCAGCATC AACAGAGGCT
GAATCCGAGT AA
|
|---|
| Protein sequence | MHTNRASSPT RLAGLFALLI ALVATLTLVP ITTSQATSFD RGYPKMGSQS EAQAGFYVKS
HRSIIRTTLF PVQTKKGAKS DLFAYCVELS VGAYYGIDLN VDGWSKFPGQ NNFAKDDLVK
EKAAWIAYNS YPNKPLDELI AKTGLSGLTA EEAITATQAA IWTLTDGAPA SSNFEYNGFI
LSNNKAPSRD QKHRVDSLFS YLLGEANTGR PEVLEPNLSV TVGNAEGNAG NRVGPIAITA
SEDTVTVVTD SPYPLVDADG NAVDLNAVPG NAVLYVDVPA DAQPGSANVS VELTGSKFTG
QLITGKYKRT QTLIISDSEK VTEAATGVVT WGAGPSLATS ASNEETGGKF VDGLGPATIV
DVVSYTGLTS GQEYTVTGEL MVRDNGEAIS TGITASQTFT PDAADGSVTV TFDITDADLA
GKTVVAFEVV TQGKNVVATH EDILDENQTV YSPLVETDAY DLTDSDQILS VEGGTLRDRI
EYSGVQTGQT YIVRGEVMDK DTGESTGITG ETAFQAGAES GVVDVDFEIP ADHAGKTLVV
FERLYVVTGD AGNTTEELIA VHEDINEERQ TVTVTGEVPE ETPTPEEPET PGKDVDLPET
PEPEQPGGET PEPEQPGEET PAPEQPGEET PAPEEGVGGE IVDNPGLVIT DDDVQGEVVD
NPANDQDTVA GPELADTGFN LTSTVVIAAL VLLLLGGGLV AYQRFSRREL QGAEAASTEA
ESE
|
|---|
| |