| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1403 |
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| Symbol | |
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| ID | 8380577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 1505394 |
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| End bp | 1506686 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 645004154 |
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| Product | deoxyribonuclease/rho motif-related TRAM |
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| Protein accession | YP_003161359 |
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| Protein GI | 256832632 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.075228 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.736746 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGGCA CCAAGGACGT TATTGGCCGT GTCGTTGAGG TAGTCATGGA GCGTCCCGCT
CATGGTGGTG AGTGTGTTGG GCGCGTTGAT GGCCGCGTCG TTTTTGTGGG CGGTGTTATT
CCCGGTGAGC GCGTGCGTGT TCGAGTGACA CAGGGCACCG AGACCTCCAG TTTTTGGCGT
GGTGAGCTTG TGGAGGTTCT TGAACCCAGC GAACATCGGG TGCATGTGTC GTGGGCGCAG
GCGCGCCGTG ATGGTGTTGG TGGGGCGGAT CTGGCTCATG TTGAGTTGGC GTACCAGCGT
GAGTGGAAAC GTCAGGTCGT TGCTGATCAG ATGGCACGCC TGGGAGGGGT CCAGTTTGAT
GGGGATGTTG AGGCTGCTCC CTGGGAAATT CATCCGGATA ATGACCAGCC TGGTTGGGGG
TGGCGTACCC GATTTGAGGT GGTTGCGAAC GACAAGGGAC GTGCGGGGAT GTTTCGGCCG
CGCTCGCATG ATGTTGTTCC GTTAACGCAT ATGCCGTTGG CGACAGCTCA AGCGCAGGAG
CTTGCTCAGG TGCAAGGGGT GTGGTCTCGT CAGTGGGAAC CACACATGCG GTTAGAGGTC
GTTGCCCCCA CTGACGGCCC TGGTGTGGTG TTGGGAAATG GAGAACCGTT GCGTAAGGGG
CACGTGGATG TGCGTCCGAA TGCGCGGCGT TTTGTCACAG AGATTGTTCA CGCGTATGGG
CGGCCTTACC GCTACCGGGT TGCTGCGAAT GGTTTTTGGC AGGTGCACCG TGACGCCCCC
GAGGTGCTGG TCACAGCGGT TCTTGACGCG CTGGGGGATG GCTTTGAGGG TGGTCGCATC
CTTGATGCGT ACTGCGGGTC GGGTTTGTTT ACTGTTCCTC TTGCGGCAAT GGCGGGGGAG
GACGGTGAGG TTGTGGCAAT TGAGGGCGAT GCTCGTGCGG TGAAGGATGC TCGGCGTAAT
GTGATGAATA ATCTTGACCC GGACATCGCG CAGAAAGTTC GGTTCCATCA GGGCAGTGTG
GGTGATGTGC TCGCACACCT TCAGGATGTG CCCTCAGTGG ATGCTGTTGT CCTTGATCCG
CCTCGGGTGG GTGCTGGGGC GCACGTGATT GATGCGTTGG TTGCGCTGTC TCCTCAAACA
ATGGTGTATG TGGCGTGTGA CCCGGCTGCG TTGGCTCGTG ATACGGCGCT TGTGGGGGAG
CGCGGATACC AGTTGACCTC TATGCGGGCT TTTGATTTGT TCCCCATGAC GCATCACGTG
GAATGTGTGG CTGTCTTTCA CCGGCGCTCA TGA
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| Protein sequence | MSGTKDVIGR VVEVVMERPA HGGECVGRVD GRVVFVGGVI PGERVRVRVT QGTETSSFWR
GELVEVLEPS EHRVHVSWAQ ARRDGVGGAD LAHVELAYQR EWKRQVVADQ MARLGGVQFD
GDVEAAPWEI HPDNDQPGWG WRTRFEVVAN DKGRAGMFRP RSHDVVPLTH MPLATAQAQE
LAQVQGVWSR QWEPHMRLEV VAPTDGPGVV LGNGEPLRKG HVDVRPNARR FVTEIVHAYG
RPYRYRVAAN GFWQVHRDAP EVLVTAVLDA LGDGFEGGRI LDAYCGSGLF TVPLAAMAGE
DGEVVAIEGD ARAVKDARRN VMNNLDPDIA QKVRFHQGSV GDVLAHLQDV PSVDAVVLDP
PRVGAGAHVI DALVALSPQT MVYVACDPAA LARDTALVGE RGYQLTSMRA FDLFPMTHHV
ECVAVFHRRS
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