| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1366 |
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| Symbol | |
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| ID | 8380543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 1463867 |
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| End bp | 1465729 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645004115 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_003161325 |
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| Protein GI | 256832598 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.25927 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCGAGTA CCAACACGCG CGGACGAGCC CCTTGGCGGC CGCTTATCAC CTTGCTTGTC
ATCCTTGCCG CAGGAGCGGG AGCACTGTTC GCTGGTGTGA CCACATCCAG TGAAGCCCAG
TGGACACCGA AACTTGCCCT TGATCTTGAG GGGGGCACCC AAATCATCTT GCAAGCGGTG
ACCGCGAACA ACGAGGCTGT CTCAGCTGAG GACATCAGCC AAGCAATCGC GATTATTCGC
CAACGCGTCG ACTCTTCTGG TGTTGCAGAA GCCGAGATCA CAAGTCAGGG TGGGCGTAAC
ATTGTCGTCG CGCTTCCCGG CAACCCCAGT GAAGAAACCC TCGCGCTGGT CCGTGAGTCG
GCGCAAATGC AGTTCCGCCC TGTGCTGTAC ATGGGAGATC CCGCACCAAT TGAGGTGGAA
ACTCCAGCGG ACGGGGAGAC AACCAATGAC ACAGACGATG CTAGCGATGC GCAGGAACCA
ACGGCCGATG CGCAGCAGGA TCCGGCTGCT GAATCAGCAG AACCAGTCGG TGGCCCCCTT
GACGAACTCA TTTCGGATGA CGCCGAGGCA GCAGAAGCAG AAAATCCTAG CGACCTCGCT
CAGATCACGC GTGATGTCGT TGAGGAGTTT TACGCTCTGG ACTGTACATC CCCTGATAGC
TTGACTGGTG GTGGGGGAGT CGCTGACCCT AATGCTGTCC TAGTGACGTG CTCTGAAGAG
GGCGACACCA AGTACATCCT TGGCCCCATG GAAATTTCTG GGAATGACAT CGCTCAAGCA
AGCTCGGGTC TGAAGCAGTT GCAGGGTGGT GCAATGACGA ATGACTGGAT CGTCAACATC
GCGTTCAACA GTCAAGGGAC ACGAGACTTC GAAACAGTGA CGAGCCGCCT GTCCCAGCTA
CCTGAATACG AACAATGGAT CTACGCACCG ACTTCCTCGG CGCCAAACAT GTTCGCCATT
GTTCTTGACA ATCTTGTCCT GTCATCACCG GGCGTGACTG AGGTTTTCCG CACAGGTGAG
GCATTCATTG AAGGGACTTT CACCAACGAG AGTGCAAATA AGCTCGCAAA CCAGTTGAGT
TTCGGAGCAC TTCCCTTAAC TTTTGAGGTG CAGAGCGAGG AGACAATCTC GGCCACCCTC
GGGAGCGAAC AACTACAAAA AGGTATCCTC GCCGGGTTGA TCGGTCTCAT CCTCGTGGGC
GTGTACTCGC TGGTTCAATA CCGTGTGCTG GGTACGCTGA CAATTGCATC ACTGGTGATC
GCAGCTGTCG CTACGTATCT CGCCTTGGCG TTACTGTCGT GGGTGCAAGG GTACCGACTC
TCTCTTGCGG GTGTTGCCGG AATCATCGTC GCGATCGGTA TTACCGCTGA CTCATTCATC
GTGTACTTCG AACGTATCCG CGATGAGCTC CGTGAAGGGC GCAGCCTCGA TGGAGCCATT
GAGGTGGGGT GGGACCGTGC GAAACGAACC ATCATTGCCT CTGATGCTGT GAACTTTATT
GCAGCCGTTG TGCTCTACTT CCTCGCTGTA GGTGGAGTGC GAGGCTTCGC ATTCACACTC
GGACTCACCA CGTTGATTGA CCTGATCGTC GTCTTCTTCT TCACTCACCC CGTACTCCAA
CTACTTGCAC GTACCCGATT CTTCAGGAAC GGACACAAAC TCTCTGGGTT TAACCCCGAA
TCGCTGGGGG TGGACCGTCC TCGATATGTT GGCCGGGGTA AAGTCGCCAC CGCGCAAAGT
ACCCCGATGT TCAACGACGA CGGGACCCGC ATGACCATCG CACAACGGAA AGCCGCTCAG
CGCAGCAAGG AACAAACTGA ACAGGTGAGC TCCCAGAGCA CAACACGCAA GGACGGTGAG
TGA
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| Protein sequence | MASTNTRGRA PWRPLITLLV ILAAGAGALF AGVTTSSEAQ WTPKLALDLE GGTQIILQAV
TANNEAVSAE DISQAIAIIR QRVDSSGVAE AEITSQGGRN IVVALPGNPS EETLALVRES
AQMQFRPVLY MGDPAPIEVE TPADGETTND TDDASDAQEP TADAQQDPAA ESAEPVGGPL
DELISDDAEA AEAENPSDLA QITRDVVEEF YALDCTSPDS LTGGGGVADP NAVLVTCSEE
GDTKYILGPM EISGNDIAQA SSGLKQLQGG AMTNDWIVNI AFNSQGTRDF ETVTSRLSQL
PEYEQWIYAP TSSAPNMFAI VLDNLVLSSP GVTEVFRTGE AFIEGTFTNE SANKLANQLS
FGALPLTFEV QSEETISATL GSEQLQKGIL AGLIGLILVG VYSLVQYRVL GTLTIASLVI
AAVATYLALA LLSWVQGYRL SLAGVAGIIV AIGITADSFI VYFERIRDEL REGRSLDGAI
EVGWDRAKRT IIASDAVNFI AAVVLYFLAV GGVRGFAFTL GLTTLIDLIV VFFFTHPVLQ
LLARTRFFRN GHKLSGFNPE SLGVDRPRYV GRGKVATAQS TPMFNDDGTR MTIAQRKAAQ
RSKEQTEQVS SQSTTRKDGE
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