| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1354 |
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| Symbol | rpsD |
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| ID | 8380531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 1449956 |
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| End bp | 1450582 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645004103 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_003161313 |
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| Protein GI | 256832586 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTTCAG TGACTCGTTC ACGCCGCCAG GTCCGCCTGA GCCGCGCCCT TGGTCTTGCG
CTGACCCCAA AGGCTGTGAA GCACTTCGAA AAGCGCCCCT ACGCTCCAGG TGAGCACGGC
CGTTCACGCC GTCGCACCGA GTCAGACTAC GCTGTGCGTC TTCGTGAGAA GCAGCGTTTG
CGTGCACAGT ACGCGCTGCG TGAAAAGCAG ATGCGTGCAG CATACGACAA GGCCCGTCAC
CTTGACGGTT TGACCGGTGA AACCATGGTC GAACTCCTCG AGACCCGCCT TGACGCACTC
GTGTTGCGTG CCGGTTTCGC CCGCACCATC CTTCAAGCGC GCCAGGCTGT TGTTCACCGC
CACATCCTCG TTGACGGCAA GCTTGTGGAC CGCCCATCGT TCCGTGTGAA GCCTGGTCAG
ACCATCCAGG TGAAGCCAAA GATGCAAGCT GCAACCCCTT ACCAGGTTGC TGCCGCCGGT
GCGCACCGCG ATGTCCTCCC AGAGGTTCCC GGATACCTTG ACGTCCAGTT GGAAAAGCTC
ACCGCTGTTC TGACTCGTAA GCCAGCACGT GCCGAAATCC CAGTCCAGTG TGAAGTGAAC
CTGGTCGTGG AGTACTACGC ACGCTGA
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| Protein sequence | MSSVTRSRRQ VRLSRALGLA LTPKAVKHFE KRPYAPGEHG RSRRRTESDY AVRLREKQRL
RAQYALREKQ MRAAYDKARH LDGLTGETMV ELLETRLDAL VLRAGFARTI LQARQAVVHR
HILVDGKLVD RPSFRVKPGQ TIQVKPKMQA ATPYQVAAAG AHRDVLPEVP GYLDVQLEKL
TAVLTRKPAR AEIPVQCEVN LVVEYYAR
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