| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1216 |
|---|
| Symbol | |
|---|
| ID | 8380393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 1294918 |
|---|
| End bp | 1296162 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645003963 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_003161175 |
|---|
| Protein GI | 256832448 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0133] Tryptophan synthase beta chain |
|---|
| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.268288 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCACGT CACTGCAAAA TATGCCCGGC CCGTTCTTCG GGGAGTTTGG TGGGCGATTT
ATGCCTGAAG CTCTCATCGC AGCTCTCGAT GAGCTCGACG AGGTGTACAG CAAGGCGAAG
CGTGACCCAG AGTTTGAGCG GGAACTCAGC TCTCTTCACC GAACATACTC AGGCCGCCCG
TCGATTATCA CTGAGGTTCC CCGGTTCGCG CAGCACGCTG GGGGTGTGCG GGTGTTCCTC
AAACGTGAGG ATCTCAACCA CACTGGCTCC CACAAAATCA ACAATGTGCT CGGTCAAGCT
CTTCTCACCA AGCGGGTGGG TAAGAAACGA GTCATTGCTG AAACTGGTGC TGGGCAACAC
GGCGTGGCAA CCGCTACCGC GGCGGCACTG TTCGATTTGG ACTGTGTCAT CTACATGGGT
GAAGAAGACA CCCAGCGTCA AGCTCTGAAC GTCGCTCGGA TGAGACTGCT CGGTGCGGAA
GTGATCCCCG TAACCACGGG GTCGCGCACC CTGAAGGATG CGATTAACGA AGCTCTGCGT
GACTGGGTGA CCAACGTGGA CACCACCAAC TATGTCTTTG GAACTGCAGC AGGGCCACAT
CCCTTCCCCG CAATGGTGCG TGACTTCCAA CGGATCATCG GTGTCGAAGC GCGCGCGCAA
ATGCTGGAAG AGACTGGGCG GCTCCCTGAC GTCGTTGCTG CATGCGTGGG CGGTGGGTCC
AACGCTATCG GAATATTCGA TGCATTTGTG GACGACGAAT CCGTTCGTCT TGTTGGCCTT
GAAGCAGGCG GGGAAGGGAT AGATACTGGA CGGCACGCCT CGACGATCTC GGGAGGTGCA
CCCGGAGTGC TTCATGGGGC GAAATCTTAT CTTCTTCAAG ACGACGATGG GCAGACTCAA
GAGTCACACT CAATTTCTGC AGGTCTCGAC TACCCGGGTG TGGGACCACA GCACGCCTAC
CTTCACTCCA TCGGGCGAGC CGAGTACCGG TCAATCACTG ACGCTCAAGC GATGGACGCA
CTTCGGCTGT TGTCAAGAAC TGAGGGGATC ATCCCTGCAA TTGAGTCAGC GCATGCTCTA
GCTGGAGCTC TTGAGCTTGG ACAACAGGCG GCCCGTGACG GGCGCAACGA CGAGGTCATC
TTGGTGAATC TGTCAGGCCG TGGGGACAAA GACGTGGCAA CAGCAGCCCG GTGGTTTCAA
CTCGTTGATG ACAACGCTGA CCTCACTGAA GGAGGCGCAC AGTGA
|
|---|
| Protein sequence | MATSLQNMPG PFFGEFGGRF MPEALIAALD ELDEVYSKAK RDPEFERELS SLHRTYSGRP
SIITEVPRFA QHAGGVRVFL KREDLNHTGS HKINNVLGQA LLTKRVGKKR VIAETGAGQH
GVATATAAAL FDLDCVIYMG EEDTQRQALN VARMRLLGAE VIPVTTGSRT LKDAINEALR
DWVTNVDTTN YVFGTAAGPH PFPAMVRDFQ RIIGVEARAQ MLEETGRLPD VVAACVGGGS
NAIGIFDAFV DDESVRLVGL EAGGEGIDTG RHASTISGGA PGVLHGAKSY LLQDDDGQTQ
ESHSISAGLD YPGVGPQHAY LHSIGRAEYR SITDAQAMDA LRLLSRTEGI IPAIESAHAL
AGALELGQQA ARDGRNDEVI LVNLSGRGDK DVATAARWFQ LVDDNADLTE GGAQ
|
|---|
| |