| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1186 |
|---|
| Symbol | |
|---|
| ID | 8380363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 1259391 |
|---|
| End bp | 1261040 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 645003931 |
|---|
| Product | DNA repair nucleotidyltransferase/DNA polymerase |
|---|
| Protein accession | YP_003161145 |
|---|
| Protein GI | 256832418 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000707508 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0119021 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCTGACT GGCCTGTCAT CGTTGCGCTC GCCCTTGCCC ACCTGCCACC CCACACACCA
GCGATCACCG TGTCCGGCAC TCGTATCACT GCCGCCTCTG CCTTCGCCCG CGCAGCGGGT
GTGCGCACCA CCATGGCTCT GCGTCACGCC CAAGAAACTC TGCCCACCCT CACCTGCCTC
CCCACACCAC CCACCGACAT CCTTGCCCGC GAACACGAAC GCATCGCCCA GGTCCTTGAC
TCTTTCCTTG CCCACCTGAC CGTGCTGCGC CCCGGCCTCA CTCTTGCCCC CATTGACGGT
GCGCTACGCC ACTACCCTGA CCCGCCAACC TTCCTCGCTG CCGTCACTGA TGCGATCACT
GACACCACCG GGATAGACCC CTGGGCGGGC ATCGCTAACG GCACCCTGCC CGCTATCCTC
GCCGCTCGGC GCGGGCGCAT CCTCACCCCC GATGAATCTT TGCCCTTTAT CCAGACCCAC
CCCTTACACA CCCTGCGTTA CACCACCACT GCCCCCACCC CCGACCCTGA ACTCACTGAC
CTGCTCGCGT TGTGGGCAAA ACTTGGTCTG CACACCTACG CAGACCTCGC CTCGTTGCCA
CCCACCGATA TAGCCACCCG ATTTGGTGCA CGCGGCATGT GGGCATACCA CATCGCCATC
GGACGGGAAG AACCACTGGT CAGCCAGGAC CGTAACGAAC CAGATATCAC GGTCTCCTCC
ACATTTGACG AACCCCTCCA CCGGGCAGAT ACCGCCGCGT TCTACGCCAA ACAGTTGGCC
AGCCAGTTAC GGGAACAACT CGTGAAACAA GGATTGAGCG CCTACGAACT CCGGGTATCT
GCCCGCACAA ATGAACGGAT ACTGACCCGC ACCTGGCGTG CAGACCCCAC CATGGTGGGA
GCACTGAGCG AACACGCCAT CACACAACGG GTGCGCTGGC AGTGCGATGG GTGGCTCAGC
GCATCGGCGA TCTGCCCGCA TACCCCAAAG GTGGGACCGC TTGACATGGT GGAACTCACC
GCAGTTCGAG TGATCCCCGC CGGACACCAC CACCCCACAC TCTGGGGGGC AGACAACACA
GACAACGACC ACACCCGGCG CCTCGTGGAA CGCCTCAGTT CCCTGGTTGG ACCTGATGGT
GTTGTTGTCC CTCGCATCAC AGGAGGACGA ACCCCCGCCG ACCGAGTGAC CTACGTTCCC
TGGGATCAGG AGGTCACAAC AACCCATGGC GGTGCGCCAC ACACCCACGT GAGCGCGCTC
GCAGGTGTTG AGGAGTTGCC GTGGCCAGGG CGTCTTCCTG CTCCTGCCCC GTCAGTGACG
GGGGAGCCGG TGAAGGTGTG GGTGCGTGAC CCGGCAGGAC GTGAGGTGAG AGTAGATGAT
CTCGGGGCAT TGGTGTCTCC GCCCTACCGG TGGTGCACTG CAGGTGTTCC TCTTCCAGGC
ACTGAACACG TCAGTGGGGG AGTGGGGGAT CATACGGTCA CTCAGTGGTC AGGTCCATGG
GTGCTTTCTC CTGCCTGGTG GGCCATGTCA TCGTCCTTTG ATTCGCCAGG GGAGTCGCAG
GCTTACCTGC AGTTAATGAG TGATTCTCAT CCGCCCATTA TGGTGGTTCT CCGCGGGCGC
ACCTGGTGGT GGGAGGGGAC TTATGAGTAG
|
|---|
| Protein sequence | MPDWPVIVAL ALAHLPPHTP AITVSGTRIT AASAFARAAG VRTTMALRHA QETLPTLTCL
PTPPTDILAR EHERIAQVLD SFLAHLTVLR PGLTLAPIDG ALRHYPDPPT FLAAVTDAIT
DTTGIDPWAG IANGTLPAIL AARRGRILTP DESLPFIQTH PLHTLRYTTT APTPDPELTD
LLALWAKLGL HTYADLASLP PTDIATRFGA RGMWAYHIAI GREEPLVSQD RNEPDITVSS
TFDEPLHRAD TAAFYAKQLA SQLREQLVKQ GLSAYELRVS ARTNERILTR TWRADPTMVG
ALSEHAITQR VRWQCDGWLS ASAICPHTPK VGPLDMVELT AVRVIPAGHH HPTLWGADNT
DNDHTRRLVE RLSSLVGPDG VVVPRITGGR TPADRVTYVP WDQEVTTTHG GAPHTHVSAL
AGVEELPWPG RLPAPAPSVT GEPVKVWVRD PAGREVRVDD LGALVSPPYR WCTAGVPLPG
TEHVSGGVGD HTVTQWSGPW VLSPAWWAMS SSFDSPGESQ AYLQLMSDSH PPIMVVLRGR
TWWWEGTYE
|
|---|
| |