| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1049 |
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| Symbol | dapF |
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| ID | 8380226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | + |
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| Start bp | 1116907 |
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| End bp | 1117821 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645003790 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_003161008 |
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| Protein GI | 256832281 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.353956 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGACTT TGCCCTTCAC TAAAGGCCAT GGCACCCGCA ACGATTTTGT GATCCTTGAT
GATCCACAGG GCGCTATTGA TCTGACCGAG GAGCTCGTGC GGGCTCTTAC TGATCGCCGT
TCCGGTGTGG GCGCAGATGG GGTCATCCGG GTGATGCGTG CCCAGTTGAG CGAGGAAGTC
CGTGATCTGG TGACAAGAGA TCCGCGCGTC GAGTGGTTTA TGGATTACCG CAATGCTGAT
GGGTCTATTG CGTCGATGTG CGGAAACGGT GTCCGAGTTT TCGCCCGCTT CCTCGAAGAA
CGTAAAGGTG TGACGGCCCT GGGCGCGGCA TACCCCATTG CTACCCGGGC TGGCATTCGC
ACGATACGAA AGATCGGTGA CTGGTATGAA GTTGGAATGG GGCCAGCCCA GTTTCTCGAT
GACACTGCAG CCCGCACAAC CGGTCATGAC GCAACAGTAA CGATCCCGAT GCAACCTCAC
GAGCCGGCGC GTCCAGGGAT TTCCGTATCA ATGGGCAACC CGCACACGGT TGTTGCCCTC
CCCGATCATG ACACTCTCGC TGAACTAGAT CTCACCCGCT CACCGGGAGT AGACCCGGTG
CCTGTGCACG GAACAAACGT TGAGTTTGTT GTTCCTGACG GCGTGGACAC AGCAGCGGAT
GGAACAGTTG TTGGGCGAGC TTCTATGCGT GTGTATGAAC GAGGTGTTGG TGAAACTCAA
TCATGTGGGA CTGGCGCGTG TGCAGCAGCT GCAGCGCTCC ACCGATGGGC CGGAGAGTCT
TCGCCACGGA CATGGACAAT CACTGTCCCC GGAGGAAGGG TCCAGGTGAC TTTAGGGACT
CACGAGGTGT TGCTCGCAGG CCCCGCTGAG CTTGTTGCTG ACGGCCACAT CACGATCACT
TCATTGAATG TTTAG
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| Protein sequence | MTTLPFTKGH GTRNDFVILD DPQGAIDLTE ELVRALTDRR SGVGADGVIR VMRAQLSEEV
RDLVTRDPRV EWFMDYRNAD GSIASMCGNG VRVFARFLEE RKGVTALGAA YPIATRAGIR
TIRKIGDWYE VGMGPAQFLD DTAARTTGHD ATVTIPMQPH EPARPGISVS MGNPHTVVAL
PDHDTLAELD LTRSPGVDPV PVHGTNVEFV VPDGVDTAAD GTVVGRASMR VYERGVGETQ
SCGTGACAAA AALHRWAGES SPRTWTITVP GGRVQVTLGT HEVLLAGPAE LVADGHITIT
SLNV
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