| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1043 |
|---|
| Symbol | |
|---|
| ID | 8380220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 1110899 |
|---|
| End bp | 1112365 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 645003784 |
|---|
| Product | RNA binding metal dependent phosphohydrolase |
|---|
| Protein accession | YP_003161002 |
|---|
| Protein GI | 256832275 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1418] Predicted HD superfamily hydrolase |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG
[TIGR03319] conserved hypothetical protein YmdA/YtgF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.620631 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.862003 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTTG ACGAATCCGG GTTTATTGTC GCAACGCTAC TTATCGCTCT CATCGCGCTG
CTTCTGGTTT TGGCAGCACG CCGTGACGCA CAAGTGGTTC GTGACAATGC CCGAACTGAT
GCTGACCATC TCATTGCCTC TGCCGAGCGG CGGGATAAAG AATCCCGTGA CCGAGAGTCA
CGCCTCGACG AACGTGAGCG GCAACTCGAT GAGGCACGCG ACACGATAGC AACCGAACAA
CGCGACATTG CGGAACAACG GGAGCGCCTT GACAGGGACC GAAAGGAGCA CCAATCTCAA
CTCAGTGCGC AGCATCGGCA ACTGACTGCA GAACTGGAAC GAATCAGTGG GCTCACAGCC
GACCAAGCAA CTCTACAGTT ACGTGAGCAA ATAGCAGCCG ACAATGATGC CTATGTGCGA
ACCGCACTTC GTGAGCGAGA ACTCCTGACC CGAACCAAGG CTGACGCCCA AGCGCGCAGA
ATCATTGCCG ATGCCATGTC CCGGTTAGCA GTTCCTGTCT CCACACAGAT CGCACAAGAA
GCGGTAGAGT TGCCGGCCCC AGAGTTCCGG GGGCGCATCA TCGGTAAAGA AGGGCGCAAT
ATTCGCACCT TTGAGGCGCT CACCGGTGTG GATGTGATCC TTGATGACGA CTCATCAAGT
GTGGTGCTGT CATCCTTCGA TGCAGAGCGC AGGGATGTAG CTGTGACCGC CATGAAGGAA
CTGATCGCTG ACGGGCGAAT CCACCCCGGG CGCATTGAAG AAGTCGTTGC CGGTGCTCGA
GAGTCAATGT CTAGCCGTAC TTTGAATGTT GGATATGACG CGGTCAAGGC TGCTGGGGTT
GGTCCACTGC CCACAGAACT GGTTGCGACG ATCGGACGGT TACGGTTTCG AACCTCTTAC
GCTCAAAACG TTCTCGATCA TTGTGTGGAA ACCGCACTCA TTGCGGGAGC GATCGCCGAC
GAGCTTGGAG CTGACGCTGC CGTTGCGCGA CGCGCTGGTT TGCTCCACGA TATTGGAAAA
CTTATGACCG CGGCCCAACC TGGTTCCCAT GCGAAGTTAG GTGCGCAACT GATCCGTGAC
TATGGTGAGA GCGAAGACGT CGCACATGCG GTGCGCGCCC ACCATGGTGA AGAGGAATTC
CGCACCGTTG AAGCGGTCAT CGTCCAGATC GCCGATTCTA TCTCCGCTGC ACGCCCAGGT
GCTCGACGCG ACGACCTGTC GAGCTATGTG GAACGTGTCA CACAACTGGA AGACGTGGTT
ACTGCTCACG AGGGTGTCGC TCATGCCTAC GTGGTGTCTT CGGGGCATGA GATCCGGGTT
GTGGTCGAGC CGGAACGTGT CACAGATGAT GACCTTCATG TACTGGCGGG AACCATTGCT
GATGCGGTGC AGCAGCACAC AACGTTTCCT GGTGAAGTTG CCATTACTGT TATCCGTGAA
ACGCGCGCCA CCTCCAGGGC AGGTTAG
|
|---|
| Protein sequence | MNLDESGFIV ATLLIALIAL LLVLAARRDA QVVRDNARTD ADHLIASAER RDKESRDRES
RLDERERQLD EARDTIATEQ RDIAEQRERL DRDRKEHQSQ LSAQHRQLTA ELERISGLTA
DQATLQLREQ IAADNDAYVR TALRERELLT RTKADAQARR IIADAMSRLA VPVSTQIAQE
AVELPAPEFR GRIIGKEGRN IRTFEALTGV DVILDDDSSS VVLSSFDAER RDVAVTAMKE
LIADGRIHPG RIEEVVAGAR ESMSSRTLNV GYDAVKAAGV GPLPTELVAT IGRLRFRTSY
AQNVLDHCVE TALIAGAIAD ELGADAAVAR RAGLLHDIGK LMTAAQPGSH AKLGAQLIRD
YGESEDVAHA VRAHHGEEEF RTVEAVIVQI ADSISAARPG ARRDDLSSYV ERVTQLEDVV
TAHEGVAHAY VVSSGHEIRV VVEPERVTDD DLHVLAGTIA DAVQQHTTFP GEVAITVIRE
TRATSRAG
|
|---|
| |