| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0990 |
|---|
| Symbol | |
|---|
| ID | 8380167 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 1048963 |
|---|
| End bp | 1049817 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 645003731 |
|---|
| Product | signal peptidase I |
|---|
| Protein accession | YP_003160949 |
|---|
| Protein GI | 256832222 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0681] Signal peptidase I |
|---|
| TIGRFAM ID | [TIGR02227] signal peptidase I, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000142727 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGTACC GCCCAGGGCG GCTCCCGCAA GGGGGCCGCC CTGTGGCGTA CACTGGGTGG
GCACCGCCGC CACTGACGCG ATGCACCACA ACGCTGACAA GCAACAATGC GTTGCACGGA
CAACCGAACG GCAGGGACCA CGTGAGCCAG CACACCCCAC ACCGCGATGC CCCGCGCCCA
GGGCGACTGT CACTGCTCAA AGAAACAGCA ATCATTGTTG TGTCTGCGCT TGTGTTGTCG
TGGCTGATTA AAACATTCCT TGTGCAGGCG TTCTTCATTC CGTCAAGTTC CATGGAAGAC
ACTCTCCAGA TTAACGACCG GATCCTTGTG TCTAAGATGA CGCCTGACAT CTTTGACATT
AATCGGGGAG ACATCGTTGT GTTTACTGAC CCTGGTGGTT GGTTGAGCGG ACACGAGGTT
GACGACACCC CAGGGCAAAA TGCTGTTCGT TCAGCATTAA CGTTTATAGG AATCTTGCCG
CAAGATGCAG GTCAACATGT TGTGAAACGT GTGATTGGTA TGCCGGGGGA TAGGGTGACG
TGCTGTACCG CAGATGGACA ACTGACTGTC AATGGACAGG CAATCGACGA AACTCCGTAC
CTGAAAGAAG GGGTAGCTCC TTCCGCCGTC GAATTCGATG TGATCGTTCC TGAGGAATCC
TTATGGGTCC TTGGTGACAA CCGGTCAGAC TCTGGTGATT CCCGGTTTAA CATGGGTGGC
CCCGGAGGCG GCTTTGTGCC CTATGACGAT GTTGTCGGTA CTGCGTTCGT TACCATGTGG
CCGCTGGATC GACTTGCGTG GCAAACCAAT CCTGGTGAGG TTTTTTCTGA CGTTCCAGCA
CCTGCTGGTT CGTAA
|
|---|
| Protein sequence | MVYRPGRLPQ GGRPVAYTGW APPPLTRCTT TLTSNNALHG QPNGRDHVSQ HTPHRDAPRP
GRLSLLKETA IIVVSALVLS WLIKTFLVQA FFIPSSSMED TLQINDRILV SKMTPDIFDI
NRGDIVVFTD PGGWLSGHEV DDTPGQNAVR SALTFIGILP QDAGQHVVKR VIGMPGDRVT
CCTADGQLTV NGQAIDETPY LKEGVAPSAV EFDVIVPEES LWVLGDNRSD SGDSRFNMGG
PGGGFVPYDD VVGTAFVTMW PLDRLAWQTN PGEVFSDVPA PAGS
|
|---|
| |