| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0565 |
|---|
| Symbol | |
|---|
| ID | 8379750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 612527 |
|---|
| End bp | 613858 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645003300 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_003160532 |
|---|
| Protein GI | 256831805 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0738] Fucose permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.308939 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0136421 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCAT CGAATAGTGC AGCGCAGATC GCCCGCGCGC GGTGGTCACT GATTGTGCTG
TTTGCGCTTC TTGGGTTGTC GTACTCCAGT TGGCTGGGGC GCCTCCCCAC GGTCAAAGAA
GCTCTCAATC TGACCGAATC CCAGTTGGGT GTTGTGTTCC TGGCCGGTGC GATCGGTTCG
TTGTGTTGCG TGACCATCGC TGGACATCTC GTTGTTCGGG TCGGCGGACG CACACTCTTG
ACAATCAGCG CAGTGGGCAT TTCTGTTGCT TTTATTCTCG AAGGGCTTGG TCCCACGCTT
GGGTCTGTCC CGCTCCTCGC CTTGGGAATT TTTCTCAATG GATGCTTTGT TGCGTTAACG
AACGTTCCGC AAAACGTTGA GACTGCGGCC GTGGAACGGC GAGTGGGGCG CGCGATCCTC
CCGCACTTCC ACGCTGCGTA TTCGATTGGT GCGGTCGTGG GGGCACTGAT TGGTGCTGCC
TGCGCTGCCG CGGATGTTCC CCTTGTCACG CAACTGAGTG TGACCGCGGT GGTGACACTC
GTTGTTCGTC TAGTCCTCAT CCCCAACATT GTGTTGGACA CGCACTTGAG TGACGAAGAA
CGCTGGGACC GTGCCCGAAC CGCACGCCAA CGTAGGGTGG AGCGCGCCGA GGTTCGAGCT
GGAATCGTTA CACCAACACA ACCTCGCACT CTGGCAGTGC TTCTTCGATC ACGGCGAGCT
TCGTTGGGGC AGGCGCTCGG CGCCTGGCGT GAGCCCCGCA CTGTGCTGAT TGGTGTCATC
ATCTTCGCTG CCGCGATGTC TGAGGGGTCA GCAAACAACT GGCTTGCGAT TGCTGTTGTG
ACGGGATTTG ACCGACCAGA AGCAACGGGA GCACTGATGT TGTCAGTGTT CCTGGTATCC
ATGACAGTTG TGCGGCTCGC TGGCACACGT GTGATTGACC GCTATGGTCG CGTCGCGGTG
TTGTCTGTCT CCGGGGTGAC GTCGATGGTA GGTCTGATTG TGTTTGGAGT CGCCCCGCAC
TTCAGTGTTG CTGTTCTCGG CATTGTGCTG TGGGGGGCTG GGGCGGCACT CGCTGTACCC
TTAGGAATTT CTGCGGCGTC AGATGACCCG CTCAAGGCGG CAGCGCGGGT GTCCGTGGTG
TCCGCATTCG CATCCAGTGC CTCGCTTGCA GCGCCACCCG TGTTGGGTTT TGTTGCCGAA
GTGACTGGTA CACGACTCGC CCTGACACTC ATTGTGGTGT TCCTTGCGGT AGGGGTAGCG
GTGTCACGCA ATGTGGCACC GATTCAACGG CATAGCAGCG AAGACACTGT CGTGCCTGAT
GAGAAAGTGT GA
|
|---|
| Protein sequence | MTSSNSAAQI ARARWSLIVL FALLGLSYSS WLGRLPTVKE ALNLTESQLG VVFLAGAIGS
LCCVTIAGHL VVRVGGRTLL TISAVGISVA FILEGLGPTL GSVPLLALGI FLNGCFVALT
NVPQNVETAA VERRVGRAIL PHFHAAYSIG AVVGALIGAA CAAADVPLVT QLSVTAVVTL
VVRLVLIPNI VLDTHLSDEE RWDRARTARQ RRVERAEVRA GIVTPTQPRT LAVLLRSRRA
SLGQALGAWR EPRTVLIGVI IFAAAMSEGS ANNWLAIAVV TGFDRPEATG ALMLSVFLVS
MTVVRLAGTR VIDRYGRVAV LSVSGVTSMV GLIVFGVAPH FSVAVLGIVL WGAGAALAVP
LGISAASDDP LKAAARVSVV SAFASSASLA APPVLGFVAE VTGTRLALTL IVVFLAVGVA
VSRNVAPIQR HSSEDTVVPD EKV
|
|---|
| |