Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_0507 |
Symbol | |
ID | 8379692 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | + |
Start bp | 550334 |
End bp | 551521 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 645003239 |
Product | histone deacetylase superfamily |
Protein accession | YP_003160474 |
Protein GI | 256831747 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0375455 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCATTG TCTCCCAGGT GTCCTGGTCT GCTGAGTTGC TCGCTTATGA TTTTGGACCC ACTCACCCCA TGTCACCGTT ACGGCTTGAT ATGACGATGC GGTTGTTGCG CGAGTTAGGG GTAGTTACTG GCCCAATGGT GCGGTTGGTG GGAAGCGGTG TTGCGGGTCG TGACCTGTTG GAGATTGTCC ATGAACCTGC CTACGTTGAT GCGGTGATTG ATGCGTCACG TGGCGGTGTG GTGGATGAGG TACGCGGGTT GGGTACGGAC GACACCCCGG GGTTTGCGTT GATGCATGAG GCGGCTGCCC GGATGACGCA GGCAACGGTT GATGCGGCGG ATGCGGTGTG GCGGGGTGAT GCGTTGCATG CGGTGAATTT GTCGGGTGGT ATGCATCATG CGATGCCAGG TGCTGCGTCG GGGTTTTGTG TGTACAACGA TGCTGCTGTG GCGATTCGTC GCCTGTTGGA TCAGGGTGCT TCCCGGGTTA TGTATGTGGA TGTGGATGCG CACCATGGGG ATGGTGTGGA GGCTGTGTTT TGGGATGATC CACGGGTGTT GACGGTCTCG ATTCACCAAA GTGGGGCGAC GTTGTTTCCG GGGACGGGGT TTGCCACTGA TGTGGGGGGA CCGCGGGCAC TGGGGACAGC GGTGAATGTG GCGCTACCGC CGCGCACGGG GTCGGCGCAG TGGTTGCGGG CGTTGGATGC GGTGCTACCT GAGGTGGCTC GGGCTTTCGG TCCTGATGTG ATTTTTTCTC AGCATGGGTG TGATGCGCAT GCTCTTGATG TGCTCTCTGA TTTGAGGGTA AGTGTTGCTG CGCAGCGGCG CGCCGCGATG ATGATTCATG ATCTGGCGCA TGAGTTATGT CAGGGGCGCT GGGTTGCGCT GGGTGGGGGC GGGTATTCGG TTATTGATGT GGTTCCGTTG GTGTGGGCGC ATGTGGTGGC TATCGCTAGC CATGTGCCGT TGGAGTGCGA CCAGCCCACT CCACCTCAGT GGCGTGCCTT TATTGAGGTG ATGCTGGACC ATGAGCCCCC GTTGACGTTG GGCGATGGCG GGGAAAGTGA CCAGTTCACT GCGTGGAGCG CGGGGTGGGA TCCGGCTGAT GAGGTTGATC GGGCGATCCG GGCGACTCGG TTGGCTGTTT TTCCTCACGT GGGTGTGGAC ACGTCGTTGG ATCTATGA
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Protein sequence | MSIVSQVSWS AELLAYDFGP THPMSPLRLD MTMRLLRELG VVTGPMVRLV GSGVAGRDLL EIVHEPAYVD AVIDASRGGV VDEVRGLGTD DTPGFALMHE AAARMTQATV DAADAVWRGD ALHAVNLSGG MHHAMPGAAS GFCVYNDAAV AIRRLLDQGA SRVMYVDVDA HHGDGVEAVF WDDPRVLTVS IHQSGATLFP GTGFATDVGG PRALGTAVNV ALPPRTGSAQ WLRALDAVLP EVARAFGPDV IFSQHGCDAH ALDVLSDLRV SVAAQRRAAM MIHDLAHELC QGRWVALGGG GYSVIDVVPL VWAHVVAIAS HVPLECDQPT PPQWRAFIEV MLDHEPPLTL GDGGESDQFT AWSAGWDPAD EVDRAIRATR LAVFPHVGVD TSLDL
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