Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_0165 |
Symbol | |
ID | 8379360 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | + |
Start bp | 176398 |
End bp | 177276 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 645002898 |
Product | Rhomboid family protein |
Protein accession | YP_003160142 |
Protein GI | 256831415 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.335904 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACCGGAC CGGACTACGG GGCTGTACAA CCTACTGACA GTGTCCCTGT GTGCAAAAAC CACAGCGACC GTCCGTCCTA CGTGCGCTGT CAGCGGTGTG GGCAACCTAT ATGCCCTGAG TGCACCCGCC AGGCCGCTGT TGGTGTGCAG TGCTCGCAGT GTACACAGGA GGGGGCACGT CAGGTCCGTA CAGTGCGGAC GGTGGCCGGT GCCACCATCA CAGATACTCG CCCACTAGTG ACCTACTGGA TTATCGGACT CAGCGTAGCG ACGTTCCTCG CACAAATCAC ACTCGGTTGG GACCAGTTCA CCCAACACTT TGTGTTTGCC CCATTCTTAG GGCTGGACGA ACCTTGGCGG TTTGTGACCG CTGCTCTTTT GCACTCCACA ACCCGCTACT TCCACATTCT GTTCAACATG TGGGCATTGT GGGTTGTTGG GTCGCAATTA GAACTGATCC TTGGTCGGGC ACGGTTCATC ACGTTGTATG TGCTTTCCGC TATCGGAGGA CACGTTGCCG TGGTTCTGCT GGCCTCGCCC GTCAACGAAT CATGGTTCAT CCCCACATTA GGAGCGTCAG GGGCAGTGTT TGGGCTATTC GGAGCACTCG TCCCTGTGAT GAAACGAGTG GGAGCGGACC TCCGGGGCAT TGCCGTGCTC ATTGGGATCA ACGTGGTTCT CGGATTCATC GTCCCGAACA TCTCCTGGCA GGGGCACCTG GGTGGGCTAC TCACGGGGGT GGTGTTGTCA GTGATTTATG TGCGCGCCCC CCAAGAACAC AAGAAAAAGA CCGCGATCAT CGGCTCCGTT ACCGTCGCGG TCCTTCTCAT TACTCTTGCA GTTGTGCGTT ATGCAGTTGT TGGCCAGCTC ACGTCATAG
|
Protein sequence | MTGPDYGAVQ PTDSVPVCKN HSDRPSYVRC QRCGQPICPE CTRQAAVGVQ CSQCTQEGAR QVRTVRTVAG ATITDTRPLV TYWIIGLSVA TFLAQITLGW DQFTQHFVFA PFLGLDEPWR FVTAALLHST TRYFHILFNM WALWVVGSQL ELILGRARFI TLYVLSAIGG HVAVVLLASP VNESWFIPTL GASGAVFGLF GALVPVMKRV GADLRGIAVL IGINVVLGFI VPNISWQGHL GGLLTGVVLS VIYVRAPQEH KKKTAIIGSV TVAVLLITLA VVRYAVVGQL TS
|
| |