Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dbac_1377 |
Symbol | |
ID | 8377042 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfomicrobium baculatum DSM 4028 |
Kingdom | Bacteria |
Replicon accession | NC_013173 |
Strand | + |
Start bp | 1548355 |
End bp | 1548960 |
Gene Length | 606 bp |
Protein Length | 201 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 645000603 |
Product | Shikimate kinase |
Protein accession | YP_003157889 |
Protein GI | 256829161 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0703] Shikimate kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.149071 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCTTTC GTCCGGGACA GTTCAAACGT GAACCTTTTT CCCTGCAAAA GAAAAATATT TACCTGCTTG GCATGCGGGC CAGCGGTAAG ACCACCGTGG GCAAGGCGTT GGCCGAGGCC CTTGGATGCG CTTTCGTCGA TACCGACGCC CTGGTCGTGA CCGAGGCCGG GCAGGATATC GACGCCATCG TGGCCGGGCA GGGCTGGGAT GCCTTTCGAA GCCTGGAGGA AGCTGCCTTG TCCCGCGCGG CGGAGCTTCC GGGCAAGGTC ATCTCCACGG GCGGCGGCAT CGTCCTCTCC CCGGCCAACC GCGACCTCAT GTACCGCACC GGGGTCAGCT TCTATCTGGC AGCCGACGCC GGGCTTCTCA TCGCGCGCAT GCTGCGCGAC CCTAATGCCG CCCAGCGTCC GGCCCTGACC CCCCTGGCAC TGCACGACGA GGTGGCGGCG ATCATGAGCG AACGCGAAGC CCTGTACATG GCCAGCATGG ACCACATGCT CCAGGCCCAC AGGAGCGTGG AGGAGCTGGT CGACGACGCG CTCGTGGCCC TGGGGCTCAA AGAGTGGGAT TATTCCGAGA AAGAACGGGT GCTGGACCGC TACTAA
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Protein sequence | MTFRPGQFKR EPFSLQKKNI YLLGMRASGK TTVGKALAEA LGCAFVDTDA LVVTEAGQDI DAIVAGQGWD AFRSLEEAAL SRAAELPGKV ISTGGGIVLS PANRDLMYRT GVSFYLAADA GLLIARMLRD PNAAQRPALT PLALHDEVAA IMSEREALYM ASMDHMLQAH RSVEELVDDA LVALGLKEWD YSEKERVLDR Y
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