| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_1145 |
|---|
| Symbol | |
|---|
| ID | 8376809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | - |
|---|
| Start bp | 1251678 |
|---|
| End bp | 1253426 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 645000378 |
|---|
| Product | histone deacetylase superfamily |
|---|
| Protein accession | YP_003157665 |
|---|
| Protein GI | 256828937 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCGTA TCCGCCCCAT CTACGACACC ACGGTCCCTG TTGACAGCCA GTGCGTGGAA
CAGGTTCAGA CCATTCTGAG CGAACGCTTC CCGTTCATCG CCCCGGAAGA GGTGATCAAC
CTGCCCGCCA CTCTCAAAAA TCCCATGGCC AAAGGCTACA GGACCATTCT CTTCGTGGCC
GAACGGCAAC GCAAAATCGT GCAGGGCTTC GCCCTGCTCT GCCACTTCTC GGACCTGCGT
TTCTGCTACC TGGATTTTCT TTCGGTCAGC CTGGTTCATG GCGGAGGCGG CGTGGGTTCG
GCCCTGTACG AAAGGGTGCG GGAAGAAGCC CGGGCTCTGG GCGACACGGC ACTTTTTTTC
GAATGCCTGC CCGATGATCC ATCCTTGTGC CCTGATGAAA TCCTGCTGCG GGAAAACAAA
GCCCGGCTGC GTTTTTACGA ACGCTACGGA GCGCGCCCCA TCGTGAACAC GGCCTACGAA
ACACCGCTTT CGGCCGAAGA CGACTGCGCC CCCTATCTGG TGGCCGATCC GCTGGACAAG
CCGTTCCAGC TGTCCAGGCC ACGGGCCCGG AGCATCATCC GCGCCATTCT TGAAAGGAAA
TACAAGGAGA AGTGTTCGCC GCAGTATGTG CGCATGGTCC TGGATTCCAT TCCGCCAAGC
CCCCTGGCGC TGCGCGAAAC CCGTTACCTG ACGGAGACGA TTTCCGCGAA CAGGCAGACC
ATCAGCGCCG ATCGAAAGAT CGCTGTCATC TGCAACCACA ATCATCGCAT CCATCACATC
CGCGAACGCG GCTATGTGGA AGCGCCGGTG CGCATTGATT CGATCCTCAG GGAAATCAAG
AAAACCGAGC TGTTCACGCT GCGGGAACCC CGGCATTTTT CGGAGCAGTA CATAACAGCC
GTGCACGACA AGAAATTCGT GACCTATCTG AAGCGGGTCT GCTCCACCCT GCCGGAAAAC
AAATCCGTGT ACCCCTACGT CTTTCCCATC AGAAACGCGG CCCGCCCGCC CAAGGAACTG
GCGGTGCGAG CCGGATACTA CTGCATCGAC ACCTTCACGC CCTTAAACGG CAACGCCTAT
GCCGCCGCGC GCGGGGCCGT GGACTGCGGC ATGACCGCGG CGCAGGAGGT GCTCGACGGA
CGCCGCCTGG CCTACGCCCT GGTGCGCCCC CCCGGACATC ACGCCGAACA CCGGGCTTTC
GGCGGGTTCT GCTATTTCAA TACCGCCGCC GTCGTCGCCC AGCACCTGAG CGCCCAGGGG
CGGGTGGCCG TGCTCGATGT CGATTACCAC CACGGCAACG GGACGCAGAA CATCTTCTAT
GAACGCAGCG ATGTTCTGAC CGTATCCATC CACGGGCATC CCAGATTCGC CTATCCGTAC
TTCAGCGGAT TCCATGAGGA AGCCGGAGAA GGACCGGGCC TTGGCTTTAA CCGCAATTAT
GCCCTGCCCG AAGAAATGCA CGGTGACGGC TATGCCGAGG TACTGCGCCG GGCCCTGGAC
TTCATCCGCG ATTTCGACCC GGCGTTTCTG GTGGTGTGCC TCGGGCTGGA CCCGGCCAAG
GGCGACCCTA CAGGCACCTG GAGCCTTCAG GCCAAGGATT TCTTCCTGAA CGGCAAGCTG
ATCGGGGCGC TGGGCAAGCA CACCGTGGTG GTGCAGGAAG GCGGGTACCG CATCCGCTCC
CTGGGCGTGA ACGCGGGCAA TTTCTTTCAG GGACTTTTCG AAGGATCCCG CCTCGCGCGC
AGCAGATAA
|
|---|
| Protein sequence | MFRIRPIYDT TVPVDSQCVE QVQTILSERF PFIAPEEVIN LPATLKNPMA KGYRTILFVA
ERQRKIVQGF ALLCHFSDLR FCYLDFLSVS LVHGGGGVGS ALYERVREEA RALGDTALFF
ECLPDDPSLC PDEILLRENK ARLRFYERYG ARPIVNTAYE TPLSAEDDCA PYLVADPLDK
PFQLSRPRAR SIIRAILERK YKEKCSPQYV RMVLDSIPPS PLALRETRYL TETISANRQT
ISADRKIAVI CNHNHRIHHI RERGYVEAPV RIDSILREIK KTELFTLREP RHFSEQYITA
VHDKKFVTYL KRVCSTLPEN KSVYPYVFPI RNAARPPKEL AVRAGYYCID TFTPLNGNAY
AAARGAVDCG MTAAQEVLDG RRLAYALVRP PGHHAEHRAF GGFCYFNTAA VVAQHLSAQG
RVAVLDVDYH HGNGTQNIFY ERSDVLTVSI HGHPRFAYPY FSGFHEEAGE GPGLGFNRNY
ALPEEMHGDG YAEVLRRALD FIRDFDPAFL VVCLGLDPAK GDPTGTWSLQ AKDFFLNGKL
IGALGKHTVV VQEGGYRIRS LGVNAGNFFQ GLFEGSRLAR SR
|
|---|
| |