| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_0988 |
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| Symbol | |
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| ID | 8376649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | + |
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| Start bp | 1071994 |
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| End bp | 1075434 |
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| Gene Length | 3441 bp |
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| Protein Length | 1146 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645000230 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003157519 |
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| Protein GI | 256828791 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.162068 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATCATCC CCCAAGCCTT GCAGAAGCTC ATCGACGGAT CAGAGCGTCA AACCAGAATC
TTCAAAAGCG GTCCCGCTTC GCAGATGTTT CTGGCTCAGG CGTTGATTGA AAAGGGCCAC
AATGTCGTGC TGGTGCTGCC GCCAAGCGCG GATCTGCCCT TGTACGACTC CCTGGCGCGC
CTCTTTTCGC CTGCGGACAG AAACCTTTCC TTTTGGGAGC GGCGCTGGCT GCGTTTTCCC
CATTATTCAG TGGAGGACCC ACGTCGTTCC CCTTGGCCGG AACGCTGGCG GACCCTTTTT
GCCCTGACGC AGAAAAAGCG GGGACGCGGG GTGCTCCTGC CGCTTGAGAA CCTGATTCAG
AAATGGCCGC ACCCGGAACT CTTGCAGCGG GAGCATCTGA ATCTGTCGGA AGGCGAGGAG
ATTTCCCAGG AGGATCTCCT GGAGACTCTG GTCAACTGGG GGTATGCACG CGTTTCCATG
GTCACCGCCG TTGGCGAGAC GTCCCTGCGC GGCGACATCA TGGATATTTT TTGTCCCGGC
TACGACCACC CGCTGCGACT GGAATTTTTC GGCGACACCC TGGAGCGCAT CCGGCTTTTT
GAACCCATGT CCCAGCGGTC TCGCGCCGAA CTCAAATCCC TGACAATTCT GCCCGTGGCC
GGATGCATAG GTGCCGACAC ATACAAGGAA GAAGCCCGGA GCATGTTCGA CGGATGGTTG
CGGCTGGGTG AGATTGCAAA GCCTGCTCGC GCGGGGCTTG AAAAGGAGCT GCTGCAGGTC
CATCCGCATT TGCCGCCGAG CATGTACTAC CCTCGGACCG TCGGCCTGGA GGCCTGGCTT
CCCGAAGGGA GCGTCTTCAT CATGGCCGAG GCCCAGGATT TGCGGACCAA GCTCGACGAG
ACAAGCTGGG CCTGGCAGAA TTATTTTCGC GACGACGAGC GGCAGTGGCC CCGGCACGGC
CTGATCCAGA CTCCGGGCGA CGTGCGCAAG ACCTGGGAGG ACAGTCGGCA GATTCTCTGC
GAGAGTCTGG TCATGGGGGT GCGCGAAGAA GGGCTGGACC TGCCTGAAGA GGGGGTAAGT
TCGTTCGAGG AACTTTTCTG GACCCCGGAA AGCCGCTCCC GGCCATGGCG GGCGCTGATG
CAGGAACTTG CCGTCTGGCG CAGAACCTAC GCCCAGACCA TTTTTTGTTT CCATACCGAA
CAGTCCCGCA AAAAATTTCT GCAGCTCGCG GCCCAGGACG ACCATGTGCT CAAAACCGAG
TACGATGCCC AGGGCAAGGG AATCTTCGCC CTGGTCGGGT CTTTGGGACA TGGCATGCGC
CTGCCTTGGG CCGAAATCCA GATTCTGCCC GAGTCCGTGC TCCAGCCGGG GGCTCCCAAG
GCGCAGCGTA GCGCAGGCAA GGCATTCAAG GGTCTCGATG CCTTTGACGA GCTTGAAAGC
GGCGATCTTC TGGTTCATCG CGATTATGGC CTGTGCCGCT TTGGCGGCTT GCATCGCATC
AAGTTCGGGG ACGTCGCCAA CGATTACCTG CTGCTGCAGT ACGACGGTGA GGACCGGCTC
TATCTGCCGG TGGACCGTCT GGGGCAGGTG CAGCGCTACA AGGGGCCCGA CGGCGCGGCC
CCGGCTCTGG ACCGTCTGGG CAGCGCGGCC TGGAGCAAGG CCCGCGAGCG CACTCGCCAG
TCCATCGCCA AGATCGCGCG CGACCTGGTC GAGATGTACG CATTCCGCAA GATCGCCAAA
GGTTTTCAGT ACAATCCCAT CTCCGAGCTG TATTGGGAAT TCGAGGCCAG TTTCGGCTTC
GAGGAGACGC GCGATCAGGA AAAGGCCATC GCCGACGTTC TGGCCGACAT GGAAAAGCCC
GAGCCCATGG ACCGGCTGGT CTGCGGCGAC GTGGGCTTCG GCAAGACCGA GGTGGCCCTG
CGCGCGGCTT TCAGAGCGGT CCTGGACGGC AAGCAGGTGG CTCTCTTGTG CCCGACCACC
GTTCTGGCCG AACAGCATTT CCAGACTTTC CGGCAGCGCA TGGAGCCGTT CTCCATCACC
GTGGGGCTCC TGAGCCGCTT TGTGCCTGCC GCCGGACAAA AACGCACCCT TGAAGCCGCG
CGCCGCGGCC AGGTGGACGT CCTCATCGGC ACCCACCGCA TGCTCTCCAA AGACGTGGAG
TTCGCCAATC TGGCCCTCCT GATTCTCGAC GAAGAGCAGC GGTTCGGCGT CAAGCACAAG
GAGCGCATCA AGAAAATGCG TTCGACCATC GATGTCCTGA CCCTGACCGC CACGCCCATC
CCGCGCACCT TGCAGCTCTC CCTGTCCGGG ATCCGGGGCC TTAGCGTCAT CGAGACCCCG
CCGCGCGATC GCAAGCCGGT GGAGACCTCA TTGCTGGAAC GCGATCCGGC CCAGCTCAAG
GTCATCCTGG AGCGCGAGCT GGCCCGGGGC GGCCAGGTTT TCTGGGTCTA CAACCGGGTG
CAGGGACTAG AGCGGGTGGT GGAGTTCGTG TCCTCCCTGG TTCCCGGTGC GCGGGTCGGC
ATGGGGCATG GCCAGATGAA GGCCCACGAT CTGGAAGAAA CCATGCACAA GTTCTGGCAT
GGCGAGCTCG ACGTGCTGGT CTGCACGGCC ATCATCGAGT CGGGCCTTGA TTTTCCCCGC
GCCAACACTC TCATCGTCGA CCAGGCTCAG CTTTTCGGGC TCGGCCAGCT GTACCAGCTG
CGCGGCCGGG TAGGGCGCTC CAGCGAGCAG GCCTACGCCT ATTTCATCAT CCCCGACCTG
GACCGCCTGC AGGAAACCTC GCGCAAACGC CTGAAAATCA TCCTCGACAT GGACTACTTG
GGCGCGGGCT TCAAGGTGGC CATGGAAGAC CTGCGCCTGC GCGGAGCCGG CAACATCCTC
GGCGAGGCCC AGTCCGGGAC TATCGGCAAG GTCGGCCTCG ACCTCTTTTT GGAAATGCTT
GAGGAAGAGG TGACCAGATT GCGCGGCGGA AAGGTCGAAA CGGAGATCGA GCCGGAGCTC
AATCTCGGCT TCCAGGCCCT CATTCCCGAA GAGTACGTGG CCGACGGCAA GGAACGCCTG
CATTATTACA AGGCCCTGTC CTCCTGTCAC GACGAGGGGG CCATCGTCGA AATCGTGGAC
GACATGCGCG ACCGCTTCGG CTCTCTGCCC GAGGCGCTGA AGACCTTTGT GGCCGTGCTC
ATGATCAAGA TTGACGCACG CAGGCTGGGC GCGGTGCGGG TGGACCTGTT CGAGGACCGG
GCGCTTATCC ACTGGGACGA AACCCGGCAT AATGTCGACC TCTCCAAGCT CATGGGTTGG
GTGGGCGAAA ATGCCGCCTG CGCCCGGATT TTGCCACCGG CCAAGCTGGA GCTGCGCCTG
CCTGCCGCGG CCTCGCCGAC CCATGCCATG CATGGGTTGA AAGACCAGCT GCTGGTGCTC
AGAGAGCGGA TCAAGCTGTG A
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| Protein sequence | MIIPQALQKL IDGSERQTRI FKSGPASQMF LAQALIEKGH NVVLVLPPSA DLPLYDSLAR
LFSPADRNLS FWERRWLRFP HYSVEDPRRS PWPERWRTLF ALTQKKRGRG VLLPLENLIQ
KWPHPELLQR EHLNLSEGEE ISQEDLLETL VNWGYARVSM VTAVGETSLR GDIMDIFCPG
YDHPLRLEFF GDTLERIRLF EPMSQRSRAE LKSLTILPVA GCIGADTYKE EARSMFDGWL
RLGEIAKPAR AGLEKELLQV HPHLPPSMYY PRTVGLEAWL PEGSVFIMAE AQDLRTKLDE
TSWAWQNYFR DDERQWPRHG LIQTPGDVRK TWEDSRQILC ESLVMGVREE GLDLPEEGVS
SFEELFWTPE SRSRPWRALM QELAVWRRTY AQTIFCFHTE QSRKKFLQLA AQDDHVLKTE
YDAQGKGIFA LVGSLGHGMR LPWAEIQILP ESVLQPGAPK AQRSAGKAFK GLDAFDELES
GDLLVHRDYG LCRFGGLHRI KFGDVANDYL LLQYDGEDRL YLPVDRLGQV QRYKGPDGAA
PALDRLGSAA WSKARERTRQ SIAKIARDLV EMYAFRKIAK GFQYNPISEL YWEFEASFGF
EETRDQEKAI ADVLADMEKP EPMDRLVCGD VGFGKTEVAL RAAFRAVLDG KQVALLCPTT
VLAEQHFQTF RQRMEPFSIT VGLLSRFVPA AGQKRTLEAA RRGQVDVLIG THRMLSKDVE
FANLALLILD EEQRFGVKHK ERIKKMRSTI DVLTLTATPI PRTLQLSLSG IRGLSVIETP
PRDRKPVETS LLERDPAQLK VILERELARG GQVFWVYNRV QGLERVVEFV SSLVPGARVG
MGHGQMKAHD LEETMHKFWH GELDVLVCTA IIESGLDFPR ANTLIVDQAQ LFGLGQLYQL
RGRVGRSSEQ AYAYFIIPDL DRLQETSRKR LKIILDMDYL GAGFKVAMED LRLRGAGNIL
GEAQSGTIGK VGLDLFLEML EEEVTRLRGG KVETEIEPEL NLGFQALIPE EYVADGKERL
HYYKALSSCH DEGAIVEIVD DMRDRFGSLP EALKTFVAVL MIKIDARRLG AVRVDLFEDR
ALIHWDETRH NVDLSKLMGW VGENAACARI LPPAKLELRL PAAASPTHAM HGLKDQLLVL
RERIKL
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