| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bfae_03210 |
|---|
| Symbol | |
|---|
| ID | 8398869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Brachybacterium faecium DSM 4810 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013172 |
|---|
| Strand | - |
|---|
| Start bp | 374905 |
|---|
| End bp | 376470 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644996411 |
|---|
| Product | penicillin-binding protein, beta-lactamase class C |
|---|
| Protein accession | YP_003153787 |
|---|
| Protein GI | 257067532 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.205122 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCAC CCCGCCGCTC CGCCCCCGCT GTCCCGCCCG CCGCGCTCTC CTCGATCGCC
GCCCTGTTCG ACACGGCGGT CGCCGACCAC AAGACCTCCG GCGTGACCTG GGCGATCATC
GGCGGGCACG GCCACGAGCA GGAGGTGCTG GGCCACGGCG CCGCCGGGCA CCGCGAGCTC
ACCGGCGGGG CCCCGGCCGA GGGGACGGGG CCGATGGATC GCGCGACCGT CTCCCGCATC
GCCTCGATGA CGAAGTCGTT CACCGCCGCG ACGCTCCTCG CGCTGCGGGA CGAGGGCCGG
CTGCACCTGG ACGACCCGAT CTCCGCCCAC GTCCCCGAGG CCGCCGGCGC CTTCGAGCTC
GCCGCCGACG AGCGCGAGCC CACCCTGCGC CAGCTGCTCA CCATGAGCGC CGGCCTGGTC
ACCGACAACC CGTGGGGCGA CCGACAGGAG GCGATGACGC GCGAGGAGTT CGCGGCGACG
CTGCGCGGCG GGCTCGGGCA CGTGCACCGC TCCGGCACCG GGTTCGAGTA CTCCAACACC
AGCTACGCCC TGCTGGGCCG GGTCATCGAC GAGGTCACCG GCGGCGACTA CCGGGCGGAG
ATCCGGCGGC GCTTCCTGGA GCCGCTGGGG CTCGGCGCCA CCGGCTGGTC CGCGCAGGAG
ATCGACACCG CGCACCTGGC CACCGGGCAC CGCCTCGCCG ACCGCACCGA CGCCACCCGC
TTCGAGCCGG TGCCGCTGGA TTCCCCCGGG GTGTACGGGG CGATGGCCGG GCTGTTCTCG
ACCGTGGACG ATGTGGCCCG CTGGGTGCGC TTCCTCGCCG CCGCCGATGC GGCCGACGCC
GCCGAGCGGG AGGCGGGCCC GCTGGCCACC GCGTCGCGGC GCGAGATGCA GCAGCTGCAC
CGCCACCATC CGCTGGCCGC CCTGCCGGTG GACCCGGATG ACCCCTCACG CACCTCGCCC
GGCTTCGACC GGGTGCGCGG CTACGGCTTC GGCCTGGTGG TGGAGCACTT CCCGGATCTG
GGCGAGGTGA TCTCCCATTC CGGCGGCTAC CCCGGGTACG GCTCGTTCAT GGTGTGGCAC
CGCGACTCCG GGGTGGGCGT GGTCGCGCTC GCGAACTCGA AGTACGCCCC CGCCACGACG
CTGTCGATGC AGGCGCTGCG CCTGCTGCAG CGCGAGGTGC CCGGCCTGCT CGAGAGGCGG
GCGCCGGAAG CCGCGCCCCG CACCCGCGAG GCGGGCGAGG CGGCGCTGGC CTGGCTGGTG
GGCGGGGAGG ATGCCGTGGC CGATGCCTGG TTCGCGGACA ACATGGACCT GGACGTGCCG
CGCCCGGAGC GGCGGCGCCG GCTCGAGGCC GCCCTCGTCG CGGCCGGACT CGACGCGGCA
GTGCTCGCGG ACCTGCGGGT GGAGCAGGCG CAGGTGCTCA GCCGCGCCCG ACTGCGCTGG
ACGGTGCCCG GCCGCGGGGA GGGCGCGCTG TCGCTGCGGA TCGAGCTGCT GATGGATCCG
CGCCGCGGCG CGCTGCTGCA GTCGCTGGAC ACCACGACCG TGGCCGGAGG TCAGGCGAAG
GCGTAG
|
|---|
| Protein sequence | MPAPRRSAPA VPPAALSSIA ALFDTAVADH KTSGVTWAII GGHGHEQEVL GHGAAGHREL
TGGAPAEGTG PMDRATVSRI ASMTKSFTAA TLLALRDEGR LHLDDPISAH VPEAAGAFEL
AADEREPTLR QLLTMSAGLV TDNPWGDRQE AMTREEFAAT LRGGLGHVHR SGTGFEYSNT
SYALLGRVID EVTGGDYRAE IRRRFLEPLG LGATGWSAQE IDTAHLATGH RLADRTDATR
FEPVPLDSPG VYGAMAGLFS TVDDVARWVR FLAAADAADA AEREAGPLAT ASRREMQQLH
RHHPLAALPV DPDDPSRTSP GFDRVRGYGF GLVVEHFPDL GEVISHSGGY PGYGSFMVWH
RDSGVGVVAL ANSKYAPATT LSMQALRLLQ REVPGLLERR APEAAPRTRE AGEAALAWLV
GGEDAVADAW FADNMDLDVP RPERRRRLEA ALVAAGLDAA VLADLRVEQA QVLSRARLRW
TVPGRGEGAL SLRIELLMDP RRGALLQSLD TTTVAGGQAK A
|
|---|
| |