Gene Apre_1248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApre_1248 
Symbol 
ID8398037 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameAnaerococcus prevotii DSM 20548 
KingdomBacteria 
Replicon accessionNC_013171 
Strand- 
Start bp1336055 
End bp1337159 
Gene Length1105 bp 
Protein Length367 aa 
Translation table11 
GC content42% 
IMG OID644995593 
Productpeptide chain release factor 2 
Protein accessionYP_003152993 
Protein GI257066737 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1186] Protein chain release factor B 
TIGRFAM ID[TIGR00020] peptide chain release factor 2 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.631536 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGAAA TATTTGAATT AAGATCTGAT ATAGAGGATT TAAGCCAAAA ACTAAAACTA 
ATCGGAGATT CTCTTTGACC CAGCTAGCTT GGAAAAAGAG ATAAAAGAAC TCGAGAAACA 
ATCAGCGAGT CCTGATTTCT GGAACGATTC GGATAAGGCC CAAAAGATAA TGGCGGATCT 
TGCAAGTAAG AAAGACGAGC TTTCCGATTA CAAAAAGCTT GAAAATGGCT TAGTAGACAA 
TACAGATATG CTTGATCTTG TGGAGATGAG CGAAGAGAAA GAGACAGATA CTATAGAAGA 
AGTCGAAGAT TCTCTAAAAA ACCTCGCTAA GCTTGCCACT CAGATGAAGC TTAGGACCCA 
ACTTGATGGG GAATATGACA AGAACAATGC CTATATATCA ATCAATGCAG GAGCCGGTGG 
ACTTGAGGCT ACAGACTGGG CGGATATGCT CTTTAGGATG TATAAGAGAT ACTTCGATAG 
TATCGGCTTC AAGTATGAGA TTAAAGATTT AAACAATGAA GAAGCAGGTG GAATCAAGTC 
GGCTACCATG CATGTTACTG GTCCTTATGC TTACGGATAT CTTAAGGCAG AAAAGGGAGT 
CCACAGACTT GTGAGGATTT CTCCTTTCGA TAGCCAATCC AGAAGACACA CTTCTTTTGC 
CTCTGTCGAT GTATTCCCAG AGCTTGATGA GAATATCGAA CTTGATATCG ACCCGTCAGA 
CCTAAGAATA GATACCTACA GGGCAAGTGG AGCAGGAGGC CAGCACGTCA ATAAGACCGA 
CTCTGCCGTA AGGATTACCC ACATACCAAC CGGTGTAGTT GCGACAAGTC AGGCAGAACG 
TAGCCAAATC CAAAATAGAC AGACTGCAAT GAATCTTTTG AAAAGTAAGC TTGTTCAGAT 
CAAAGAAGAA GAGCAAAGAG AAAAAATCGA AGACATACAA GGAAGCTACT CCCAAATCGC 
TTGGGGCAGC CAAATCAGAT CCTATGTTTT CCAACCTTAT ACCCTGGTCA AAGACCACAG 
GACGGGTTTC GAGATGGGAA ATGTAGAAGC TGTGATGGAT GGAGACATCC AAGGCTTTAT 
AGATGCTTTC CTTGCTGATA AATAA
 
Protein sequence
MKEIFELRSD IEDLSQKLKL IGDSLDPASL EKEIKELEKQ SASPDFWNDS DKAQKIMADL 
ASKKDELSDY KKLENGLVDN TDMLDLVEMS EEKETDTIEE VEDSLKNLAK LATQMKLRTQ 
LDGEYDKNNA YISINAGAGG LEATDWADML FRMYKRYFDS IGFKYEIKDL NNEEAGGIKS 
ATMHVTGPYA YGYLKAEKGV HRLVRISPFD SQSRRHTSFA SVDVFPELDE NIELDIDPSD 
LRIDTYRASG AGGQHVNKTD SAVRITHIPT GVVATSQAER SQIQNRQTAM NLLKSKLVQI 
KEEEQREKIE DIQGSYSQIA WGSQIRSYVF QPYTLVKDHR TGFEMGNVEA VMDGDIQGFI 
DAFLADK