Gene Apre_0981 details

Gene Information

• Locus tag: Apre_0981
• Symbol: ligA
• ID: 8397767
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Anaerococcus prevotii DSM 20548
• Kingdom: Bacteria
• Replicon accession: NC_013171
• Strand: -
• Start bp: 1050179
• End bp: 1052179
• Gene Length: 2001 bp
• Protein Length: 666 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 644995328
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_003152730
• Protein GI: 257066474
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATAAGA GAGAGAAAAT AGATAAATTA ATAGAAAAAA TAGAGAATTT AAACTACCAC 
TATTATACTT TGGATGAGCC TCTAGTTTCT GATGGAGAAT ATGATCAAAT CTATGATGAA 
CTTAGAAAAC TCGAAGAGGA AACAGGCTAT GTTAGAGATG ATTCTCCCAC CCAAGTAGTC 
GGAGGAGAAA TACTTGATAA GTTTGAAAAG CATTTTCATA TAACTAAGCT CTTATCTCAA 
AACAAGGCAC AGACTCACGA AGAGCTCGAA GCTTGGATTG ATAGGTGTAA TAGATTAAGA 
GATGACTATA ATATAAATCA CGATGATAAA TTAGCTGAGC TTGAATATAT AATGGAGTAT 
AAATTCGATG GTCTAACAGT AAACTTAACC TACAATAATG GTAATTTAGT AAATGCTGCG 
ACTAGGGGTA ATGGAATCAT CGGAGAAGAA ATTTCTCCTC AGGTTAGAAC TATTAGATCA 
ATTCCTAATA GAATTAAAGA GAAGTCTTTA CTAGAAATAC AAGGCGAAGC ACTAATGCCC 
TTATCAGAAC TAACTCGTTA CAATGAGGAA AATGAATTGC AGCTAAAGAA TGCTAGAAAT 
GCTGCGGCAG GAGCACTTAG AAATCTAAAC ACCAAAGAAA CTGCAAAAAG GAAGCTTACA 
GCCTACTTCT ATTCTATACC AACTAATAAC CTAGATTTTG CTACTGAAGA AGATATGTTG 
GAATTTCTAA AAGAACAGGG ATTATTAATT CATCCTTACC ATAAAAAAGT TCATAATCTA 
GAAGAAATGC TAGCAGAACT TGATTTTATA GAGGAAGAAA GAAAAAATAT AGATATTCTA 
ACTGATGGCG TAGTTATTAA GATCAATGAT AAAAGAACTC AAGAAGTCTT AGGCTCAACA 
AACAAATTTC CTCGTTGGTC AATAGCTTAT AAATTCGAGG CAGAAGAATA TACCACGACA 
TTAAGGGAAG TTGTTTGGAA TGTAGGAAGA AGTGGAAAAG TAACTCCTAG TGCAATACTA 
GATCCAGTTG AATTTTCTGG GGCTACAGTA AGTCGAGCCA CCCTAAACAA TTATGATGAT 
ATTATTAGGA AAAAAGTAAG AATCGGATCT AAGGTATTCA TCAGAAGATC GAATGATGTA 
ATCCCTGAAA TCCTAGGGGT TGTAGATGAG AATCAAGAAG GAACGAAAGA GATAGAAAAG 
CCTAGCAAAT GCCCATATTG CGGCAGCGAG TTAATTCAAG GCAATGTCCA CATAATTTGT 
CCTAATTCTA TTTCATGTAA ACCACAACTT CTTGCGAGAA TGGAGCATTT CACCTCAAGA 
AATGCAATGG ATATAGAAGG ACTTTCTGAA AAAACTATAG CCCAACTAAT GGAAGAGTTA 
GATATAAATG AAGTAGATGA TATATATGAT CTTAGCTATG ACGATTTAAT CAATTTAGAT 
AGATTCGGAG ATAAGAAAAC GAAAAATCTT TTAAATGCCA TAGAAGCAAG TAAAAAGGTT 
GATCTTGATA ATTTTATCTA TGCAATAGGA ATACCAAATG TAGGTGAAAG AACATCTAGA 
GATTTAGCCA ACAAGTTTAA GAGTTTTGAT GCTTTAAGAC ACGCTAGCCT TGAAGAGCTT 
TCAGATATTG ATGATATAGG TGAAATTACA GCACAAAATA TAATCGAATA CTTTAGAGAT 
CCTAATATTA GCAAATCGAT CGATAATTTA TTGAAAAAAG GTATAGAAAT ATCCGAAGTA 
AAAGCAGATA ATAATAGTGA TAGCTTAAAT GACATGACTT TTGTTATTAC TGGAACTATA 
GATAATTATA AAAGAGATGA CATAAAGAAA CTTTTGGAAA GTAACGGAGC TAAGGTTACT 
GGATCAGTTT CAAAGAATAC GGATGTTGTT TTAGCTGGTG AAAAATCTGG TTCAAAGAAA 
GATAAGGCTA AGAATTTAGG AATAGAAATT TATGAGAATG ATAAATTATA TGATTTCTTG 
AAAGAATTGG AAGGAATGTA A 

 

Protein sequence

MDKREKIDKL IEKIENLNYH YYTLDEPLVS DGEYDQIYDE LRKLEEETGY VRDDSPTQVV 
GGEILDKFEK HFHITKLLSQ NKAQTHEELE AWIDRCNRLR DDYNINHDDK LAELEYIMEY 
KFDGLTVNLT YNNGNLVNAA TRGNGIIGEE ISPQVRTIRS IPNRIKEKSL LEIQGEALMP 
LSELTRYNEE NELQLKNARN AAAGALRNLN TKETAKRKLT AYFYSIPTNN LDFATEEDML 
EFLKEQGLLI HPYHKKVHNL EEMLAELDFI EEERKNIDIL TDGVVIKIND KRTQEVLGST 
NKFPRWSIAY KFEAEEYTTT LREVVWNVGR SGKVTPSAIL DPVEFSGATV SRATLNNYDD 
IIRKKVRIGS KVFIRRSNDV IPEILGVVDE NQEGTKEIEK PSKCPYCGSE LIQGNVHIIC 
PNSISCKPQL LARMEHFTSR NAMDIEGLSE KTIAQLMEEL DINEVDDIYD LSYDDLINLD 
RFGDKKTKNL LNAIEASKKV DLDNFIYAIG IPNVGERTSR DLANKFKSFD ALRHASLEEL 
SDIDDIGEIT AQNIIEYFRD PNISKSIDNL LKKGIEISEV KADNNSDSLN DMTFVITGTI 
DNYKRDDIKK LLESNGAKVT GSVSKNTDVV LAGEKSGSKK DKAKNLGIEI YENDKLYDFL 
KELEGM