Gene Ksed_20490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_20490 
Symbol 
ID8373553 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp2126717 
End bp2128027 
Gene Length1311 bp 
Protein Length436 aa 
Translation table11 
GC content69% 
IMG OID644992298 
ProductABC-type sugar transport system, periplasmic component 
Protein accessionYP_003149808 
Protein GI256825848 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.0446112 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.538576 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGACGGC GCAGCACACA GGCGCGATGG GCCACCGGCG TGGCACTCGG CGCCCTGGTC 
GTCACGGGGT GCGGGGGTTC TGAGGAACCC GCCGGCGGGT CGAAGGAGCT GACCTGGTAC
ATCAACCCCG ACGGCGGGGG CAACAACCCC AACGGTGGCG GGCAGGCCCA GATCGCACGC
CAGTGCTCCG AGGCGTCCAA CGGGGCCTAC ACGATCCGTA CAGAGCTGCT CCCCCGCAGC
GCCAGCGACC AGCGCGTGCA GCTCCTGCGC CGCGTCGCCG CCGGTGACCC GGGCGTCGAC
ATCATGAGCA TGGACCCGGT CTTCGTGGCC GAGCTCGCGA ACGCCGGGTT CCTCGCGGAC
GTGCCGGAGG AGCTCGAGGA CGAGTTCACC GAGGACCGTG TGGAGTCGGC CATCGAGGCC
TCCACCTGGC AGGGCGAACT GGTGGCCGTG CCGTTCTGGG CCAACACGCA GGTGCTCTGG
TACCGCAAGT CCGTGGCCGA GGCCGCGGGT CTGGACATGA GCAAGCCCGT CACCTGGGAC
CAGATCACCG AGGCCGCCGC CAGCCAGGAC AAGACCGTGG GCGTGCAGGC GATGCCCTAC
GAGGGCTACG CGGTCTGGAT CAACGCCCTG ATCGCCGGCG CCGGAGGCGA GATCGTGAAG
AACCCCGGTG CGAAGGCGGA CGAGACCGAG CTCGGCATCG ACAGCGAGGC CGGGCGCAAG
GCCGCCGCCA TCATCGAGAA GATCTCCTCC ACCGGCGTCG GCGGACCGGC CCTGGGCACC
ACGGACGAGA CGGTGGCCCT CAACAGCTTC TCCTCGCCGG CCAGCTCCGG GTTCATGGTC
AACTGGCCGT ACGTGTGGGC TGCCTTCCCG GCGAACGGGG TGAAGTTCAT CGACGACATC
GGGTGGGCGC GCTTCCCGGC CACCGTCGAG GGCGAGGACA GCGCCCCGCC GTTCGGTGGC
ATCGAGCTGG GCGTGAACGC CGGCAGCGAC GCCCCGCAGG AGTCCTACGA TGCCATCCGG
TGCATCGCCA ACCACGAGCA CCAGACGATG TACATGAAGA ACATCGGCAA CCCGGCCTCG
CGCCAGAAGG TGTTCGACGA GCCGGAGATC AAGGAGCAGT TCCCGATGGC GGAGTTGCTG
CGCGAGTCGC TGGACGAAGC GGTCCCGCGT CCCCAGAGCC AGTTCTACAG CGACATCTCC
ACCGGGCTGC AGCGTTCGTT CAGCCCGCCC GACGAGGTCG GCCCTGACAG CACGCCGAAG
CAGGCGCAGG AGTTCATCCT GGCCGTGATC CGAGGGGAGA AGCTGCTGTG A
 
Protein sequence
MGRRSTQARW ATGVALGALV VTGCGGSEEP AGGSKELTWY INPDGGGNNP NGGGQAQIAR 
QCSEASNGAY TIRTELLPRS ASDQRVQLLR RVAAGDPGVD IMSMDPVFVA ELANAGFLAD
VPEELEDEFT EDRVESAIEA STWQGELVAV PFWANTQVLW YRKSVAEAAG LDMSKPVTWD
QITEAAASQD KTVGVQAMPY EGYAVWINAL IAGAGGEIVK NPGAKADETE LGIDSEAGRK
AAAIIEKISS TGVGGPALGT TDETVALNSF SSPASSGFMV NWPYVWAAFP ANGVKFIDDI
GWARFPATVE GEDSAPPFGG IELGVNAGSD APQESYDAIR CIANHEHQTM YMKNIGNPAS
RQKVFDEPEI KEQFPMAELL RESLDEAVPR PQSQFYSDIS TGLQRSFSPP DEVGPDSTPK
QAQEFILAVI RGEKLL