Gene Ksed_01810 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_01810 
Symbol 
ID8371693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp179394 
End bp180764 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content71% 
IMG OID644990488 
Productpredicted transcriptional regulator with HTH domain 
Protein accessionYP_003148034 
Protein GI256824074 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones52 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGCGCCG AGCGGATCGC GGCTCTCCTC TCGCGAGGCG AGGACCAGTG GTTCGAGCGG 
AAGTCCGGTC GCATCGCACC CCGTGATCTC GCCGAGACTC TGGTGGCTCT GGCCAACGCC
GAGGGCGGGA CCGTGGCTGT CGGTCTGCAC GCGGGCCAGG TGGACGGTGT GGCGGACGAC
CGCGCCAACC CCCTGCGCCA GGCGGCCCAG GACTTCACGG TCCCGGTCGT ACGGGCCGAG
GTCGAGGAGT TCCAGGATCC CCAGGGTGCC AGGATCCTGG TCTACCGGGT GGCCCCGTCC
CAGCGCGTCC ACGAGACGGC GAAGGGCGAC TGCTTCCTCC GCGTCGGAGA CGAGTCGGTG
CGCCTGCGCT TCACCCAGCG GCAGGAGCTC GAGCACGACC GGGGCCCTGA ACCCTTCGAC
GGCACACCCA GCGGAGCGGG CCTCGAGGAC CTGGACCCCG CTCAGGTCGA GAGCTACCGA
ACCACTCTCG GCGCCTCCAC ACCCGAGGGG CTGCTGCGCG CGCGGAACCT GCTGACCCCT
CGCGGGGAGG TCACCGTGGC GGGATACCTC CTCCTCTCGG AGCACCCTCA GGAGCGCTAC
CCCAACGCGC ACGTCCGAGT GCTCCGCTAC CTGGAGGACG AACGGGGAAC CGGTGCAGGG
CAGTCCCTGG CCGCTGACGG CGACATCCGC TGCGAGGGGC CCCTCCCCCA GCAGATCGAG
CAGGCCACGA GGACCATCGC GCAGATGATG CCGGCTCGCC GCGCGCTCAC CGAGAGCGGA
CGTTTCGAGG CGCTGCCCCT CATCCCGCGA GACGTGTGGC TCGAGGGTCT GGTCAACGCG
GTCGTGCACC GGTCCTACAG TCTCGCGGGT GACCACGTCC GGGTGGAGAT CTTCCCGTCG
CGTATGGAGA TCACGAGCCC CGGACGATTC CCCGGCCTCG CCGACCCGAG CGATCCGCAG
TCCATCGGCC GGCACGCGAG GAATCCCCGG ATCGCCCGGG TGTGCGCCGA TCTGGGGATC
ACCCAGGAGC TGGGCGAGGG CATCCGCCGC ATGTTCGTCG AGATGCGGCG CCGTGGCCTC
ACGGATCCGC TCTACACCCA GTCCCCGTCG GCGGTTCGCC TGGTGCTCTC CTCGGCGGAT
TCCGTCCCGG AAGCGGTCCG GTCTGCTGTC GGGAAGGGTG CCTTGGCCAC GTTGGACGCG
ATGCGGCTCG CGGGTCGGCC GCTGGGGACG GGCCAGGTTG CCGAGCTGAC GGGCCGGAGC
CGCCCCACCG TGCTGCGGCA CCTGCACCGT CTCCGTGAGG AGGGCCTCGT GAGCTGGGAG
GGCGAGTCCG CCAAGGACCC CCGAGCCCGG TGGGCAGTGC GGGGAGTGTG A
 
Protein sequence
MSAERIAALL SRGEDQWFER KSGRIAPRDL AETLVALANA EGGTVAVGLH AGQVDGVADD 
RANPLRQAAQ DFTVPVVRAE VEEFQDPQGA RILVYRVAPS QRVHETAKGD CFLRVGDESV
RLRFTQRQEL EHDRGPEPFD GTPSGAGLED LDPAQVESYR TTLGASTPEG LLRARNLLTP
RGEVTVAGYL LLSEHPQERY PNAHVRVLRY LEDERGTGAG QSLAADGDIR CEGPLPQQIE
QATRTIAQMM PARRALTESG RFEALPLIPR DVWLEGLVNA VVHRSYSLAG DHVRVEIFPS
RMEITSPGRF PGLADPSDPQ SIGRHARNPR IARVCADLGI TQELGEGIRR MFVEMRRRGL
TDPLYTQSPS AVRLVLSSAD SVPEAVRSAV GKGALATLDA MRLAGRPLGT GQVAELTGRS
RPTVLRHLHR LREEGLVSWE GESAKDPRAR WAVRGV