| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_28380 |
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| Symbol | |
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| ID | 8396726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 3142776 |
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| End bp | 3144113 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644987576 |
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| Product | type IV secretory pathway, VirD4 component |
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| Protein accession | YP_003145174 |
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| Protein GI | 257065502 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.125371 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAAC ATATCGAAGC CTCCGCCAAT CGGCCGGCCC AATCTTTCGG CGAGCGCATT
CTCGCCCAAG GCGAAACCGT GTCCAACGAC ACCCGCGCCA CGCACCTGAA CAACAACGAC
CTGATTGTCG GGCCCACCGG TTCCGGCAAG ACCCGCTACT ACGTGAAGCC CAATCTGCTC
CAGATGACGG AATCCATCAT CGTGACCGAC ACCAAAGGCA GCTTGCTTTG CGAGGTGGGG
CCGGCCTTGT CCGCGGCTGG ATACCGCGTC ATCAACATCG ACTTCACCAA CGAAGGTAGC
AACTGCGGCT ACAACCCGCT GGACTACGTC CGCTACGACA AGAAGACCAA ACGTCCGAAT
GAACAGGATA TTCAGAAAAT CAGTGCGGCG CTTACGCCTT TTGAAGATGA GCGCCAGCCG
TTTTGGGACC TGGCCGCCCG TAATCTGCTG AACTGCTTCA TCGGGTGTGT GGTCGAACGC
CTGCGTCCCG AAGAGCGCAC GCTGGAATAC GTGATGAAGA TGCTGGAAGG CACCAGCGCC
CGCGAGCACA CGTATGATCC GCAGGGTCGC ACTGAGCTGA TGCTCGACGA GAATTCCAAG
CGGTATCCCA ACAGCTACAC CGCGCGCAAG TGGAACTCTT TCCGTCCGAC CGTTGGCGCA
CCGCAAATGT ACGCAAGCAT TCTTGGCATC CTTTCCGAAA AGCTCGATCC GTACACCACC
GGTGCCGCAA TCGAAATGTT TTCCCGCAAG GAGCGCATCG ACTTCACGTC CCTAGGCCGT
GAGAAAACGG CGGTATTCCT TACCGTCAGC GACACGGACC GCTCCATGGA CCGCATGGTG
AACCTGTTCT ACACCCAGGC CCTGCAGGCG CTGTGCGACT ATGCGGATAG GGAATGCCCC
GGTTTCGCGC TGCCGGTTCC AGTGCGCATG TATCTGGACG ACTTCGCCAC GAACTGCGTG
ATTCCCGATT TCGACAACAT CATATCGGTC ATCCGGTCCC GCAACATAGC GGTGAGCATC
GTGCTTCAAT CCATCACGCA GCTGGAAACC ATGTATTCCC ACGCTCAGGC GACCACTATC
CTGAACGGCT GCGACCACCT GTTGTACCTG GGCGGACAGG ATGTGGAAAC CGCCGAGCTT
ATCGCCAAAA AAGCCCATCG CACGCTGGAA ACCATTCTCG ACATGCCCCT CGACCACGCC
TGGCTTTTCG AACGCGGACG TCGCGGCAAA CAGGTGCATC GTTACGAGCT GAAGGAGCAT
CCGCGCTACC ACAGCCTTGT CGAGGCCTAT GCATCCAGCG AAGCGGATCC GGCGCAAGAC
GCTCGGCTGT GTGCGTAA
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| Protein sequence | MIKHIEASAN RPAQSFGERI LAQGETVSND TRATHLNNND LIVGPTGSGK TRYYVKPNLL
QMTESIIVTD TKGSLLCEVG PALSAAGYRV INIDFTNEGS NCGYNPLDYV RYDKKTKRPN
EQDIQKISAA LTPFEDERQP FWDLAARNLL NCFIGCVVER LRPEERTLEY VMKMLEGTSA
REHTYDPQGR TELMLDENSK RYPNSYTARK WNSFRPTVGA PQMYASILGI LSEKLDPYTT
GAAIEMFSRK ERIDFTSLGR EKTAVFLTVS DTDRSMDRMV NLFYTQALQA LCDYADRECP
GFALPVPVRM YLDDFATNCV IPDFDNIISV IRSRNIAVSI VLQSITQLET MYSHAQATTI
LNGCDHLLYL GGQDVETAEL IAKKAHRTLE TILDMPLDHA WLFERGRRGK QVHRYELKEH
PRYHSLVEAY ASSEADPAQD ARLCA
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