| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_28180 |
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| Symbol | |
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| ID | 8396706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 3122165 |
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| End bp | 3123463 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644987557 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_003145157 |
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| Protein GI | 257065485 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000200142 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAGA AGCCGTTTGT AACGAAGGAC CAGCTCGAAG CTATTGCCGA GCAGTTCCCC
ACGCCTTTCC ACCTGTACGA CGAAGCGGGC ATCCGCAAGA ATATGGAAGC TGTCCGCGAT
GCCTTCGCAT GGAACCCGGG CTTCAAGGAG TATTTCGCCG TCAAGGCCAA CCCGAACCCG
TTCATCATCA ACATCCTGAA GGAATACGGC TGCGGCTGCG ATTGCTCGTC GTTTACGGAG
CTCATGATTT CCGAGGCGGT GGGCATTACC GGCCACGACA TCATGTTCTC GTCCAACGAC
ACGCCGGCCG AAGATTTCGT GTTGGCCGAC AAGCTGGGCG CCCTGGTGAA CTTCGACGAC
ATCACCCATA TCGAATTCTA CGAGCAGCTC ACCGGCCACA TTCCCGAAAC CGTATGCTGC
CGTTTCAACC CGGGCGGCCT GTTCGAAATG GCAAACGGCA TTATGGACGC CCCCGGCGAT
GCCAAGTACG GCATGACCGC CGACCAGTTG CGCGAAGCCT TCCGCATGTG CAAGGCCAAG
GGTGCCAAGC ACTTCGGCAT CCACGCGTTT CTGGCCAGCA ACACCGTGAC CAACGAGTAC
TACCCCCAGC TGGCGGGCGT GCTGTTCCAG CTCGCCGTGG ACATAGCCCG CGAAACCGAC
GTGCACATCG CGTTCATCAA CCTGTCCGGC GGCGTGGGCG TGGCCTACAG CCCCGACCAG
GAGCCCAACG ACATTCGGGC CATTGGCGAA GGCGTCCGCC GCGTGTACGA CGAGGTTCTG
GTACCGGCGG GCATGGGCGA CGTCGCCATT TACACCGAGA TGGGCCGTTT CATGCTGGCG
CCTTACGGAT GCCTGGTCAC ACGTGCCATC CACGAGAAGC ATACCTATAA GGAATACATC
GGCGTCGACG CCAACGCGGT GAACCTCATC CGCCCGGCCA TGTACGGCGC GTACCATCAC
ATCACCGTCG CAGGAAAGGA GGATGCGCCG TGCGATCACG TGTACGACGT GGTCGGTAAC
CTGTGCGAAA ACAACGACAA GTTCGCCGTT GACCGTTCGC TGCCGGAGAT CGAGATGGGC
GACCTGCTGG TCATCCACGA TGCCGGTGCC CATGGACACG CCATGGGCTA CAACTACAAC
GGCCGCTTGA AGTCCGCGGA GGTGCTTCTG CAGACGGATG GCACGCCGAA GCTCATCCGC
CGCGCCGAGC GACCCTCCGA TTACTTCGCC ACCCTCGACT GCTTCGAAAT CGGCACGAAA
CTCCAGACCA TCGCGCAGCG GGAAACCCCG CAGGCGTAA
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| Protein sequence | MEKKPFVTKD QLEAIAEQFP TPFHLYDEAG IRKNMEAVRD AFAWNPGFKE YFAVKANPNP
FIINILKEYG CGCDCSSFTE LMISEAVGIT GHDIMFSSND TPAEDFVLAD KLGALVNFDD
ITHIEFYEQL TGHIPETVCC RFNPGGLFEM ANGIMDAPGD AKYGMTADQL REAFRMCKAK
GAKHFGIHAF LASNTVTNEY YPQLAGVLFQ LAVDIARETD VHIAFINLSG GVGVAYSPDQ
EPNDIRAIGE GVRRVYDEVL VPAGMGDVAI YTEMGRFMLA PYGCLVTRAI HEKHTYKEYI
GVDANAVNLI RPAMYGAYHH ITVAGKEDAP CDHVYDVVGN LCENNDKFAV DRSLPEIEMG
DLLVIHDAGA HGHAMGYNYN GRLKSAEVLL QTDGTPKLIR RAERPSDYFA TLDCFEIGTK
LQTIAQRETP QA
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