| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_26210 |
|---|
| Symbol | |
|---|
| ID | 8396509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 2892238 |
|---|
| End bp | 2894997 |
|---|
| Gene Length | 2760 bp |
|---|
| Protein Length | 919 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644987363 |
|---|
| Product | ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| Protein accession | YP_003144973 |
|---|
| Protein GI | 257065301 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.443044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAGC TGCACGACAT TTCGAAACGC TATGGTGAAG GCGCCGCCTC GCACCTGGCG
CTGGACGGCG TCAGCCTTGC ATTCGCCGAG CCCTCGCTGA CCTGCATTCT GGGTCCTTCG
GGCTGCGGCA AAACCACGCT GCTCAACATC ATGGGCGGCC TCGACGGGGA CTTCGAAGGC
TCCGTCAGCA TAAACGGTGT TTCCACCAGC GGTTTTTCCG AAACCATGTG GGACGCGTAC
CGAAGCACGC AGGTGGGGTT CGTCTTTCAG GAACCCCACC TGATCGACTA CCTCACCGTG
GCCGAAAACG TCCGCATTGC GCTGGACATG GCCACCGCCC GAAGCGGCGC GGCCGTCGAC
GCCGACGCCG CCGTGGCCCG CGCCTTGGCC GATGCCGGCA TCGGCGAGCT GGGCGATCGT
CTGCCCTCGG AGCTTTCCGG CGGCCAGGCC CAACGCGTCG CCATCGCCCG AGCCCTGGTC
AAGGAGCCGC GCATCGTTCT TGCCGACGAG CCAACCGGGT CGTTGGACAG CGCCAACAGC
GCCGCCATCA TGCAGCTTCT GGCCGACATC GCTCACACCC GCTTGGTGGT CGTGGTCACG
CATGACCGCG ATTCGGCCGA ACGCTTCGCC ACCCATATAA TAGAGATGAA CGACGGCAAG
GTTGTAAGCC ACCGCCGGCT GCGCGCTCAG ACGGCTGCAG CCAAAACGAC CGCCGCACAT
GCGCCCCGCG CCAAGGCGAA GTCCGCTTCC GCCGTCTTCG AGCTGGCCCG GCGCCACCTG
AAAAACAAGC GGGGCCGCTC GATCATTACC ACGCTGGTGG CAAGCATCGG CATTTTATGC
ATCGTGCTCA TGTCCGCCAT CAATATCGGC GCCCGCGCGT ATATGGACGA AGTGGCAACG
AACTCCCTGA TCAGCTCACC CATCGAGATT AAAGAGGACG GCACGGCCAA TGCCCTGCAG
TCGCTGTCCT TCGATACGGG CGGCCTGCTG ACCCAAGGCG CCGCCGAAGG CGAGACCCCC
ACCGCGGTCA CAGCCGGCAT GCAGGCGCAG ATCATGCTGT ACGCCGCGCT GGAGAACCGC
CAGGAATGCG ACCTGAGCTC CTTCATCACG CACCTGGACC TGAGCGAATC GGACATCCGC
GACAACGCCT TCGACGTACA GATGCGATAT CCCATCGAGC TCAACGTGTA CGACCGCAAC
AACAACCAGA TTGTCAAGGC GGGCAAAGCC ACCATCCTGC GCAATATCGA CCCGTCCACC
ATCTTCGGCG AGCAGGCCAC CGAGATCATC GAGCAGAAGT TGCCCGATCC CGCCAACCTC
ATGCGCCAGT TCGTCATCAA CGACGAGACC GGGGAGACCC CTTACGAGTT GCTGGCCGGC
CGATACCCCG AAAGCTACGA CGAGCTGGTC ATCATCACGG CCCGCGACGG CTCGGTCAGC
GATTACTTCA TCTACGCGGC CGGCATCGAG GACTATCACA CCTTGGTGGA CGCAGCCACC
GACATCACCA TGGGCAACGA TTTCGAAATC CCCGAGCAGA CCCCGTCCTA TAGCTTCGAC
GACCTGCTGG GCCTGACCTA CAAAGTGGTT CCCACCTGCG ATTACTATTA CAAGGAGAAC
GGCATCTGGC AAGACGGCCG CAGCCAGAAG GACTTCCGCA AGAAGCTGCT GGCCGACGCC
ACCGAGCTCA CCGTGGTGGG CATCGTCCGC CCCAACGAGG CCATTGACAA CGGCACCGAA
ATTGGCACGT TGGCCTACGA CGAGGGGCTC ATCCCCTATC TGGTCGACGC CGCCAACGAC
AGCGAGATCG TCCAAGAGCA GCTGGCCGAC CCAGAATACG ATGTGCTCAC CGGCGAGAGT
TTCTCCGCCA CCCCGGCCAC CGAAGCCCAG CGCGCCGACT TCGAGAACAC CAAGCAGGCG
CTGCTTGACG CCATGGACCC CGAACTGTTC TCGGACTACA AGCGCCAGCT GATTGAAAGC
CTGTCGTATT CCCAGGTCAT AGCCCTTAAG CAGCAACTTG GCGGATATAT GAACGTCGAC
GGCAGCCTGA ACGTCTCCGA AGGCGACATC CGCCAAATCG CCTCGCTGCC CGACAGCACC
TTCGCCGCGT TTCTAGAGCA ATACGCGCCG TCGAGCCTGA ATGCAGGCTA CAAGAAGAAC
CTGGATGCGT TAGGCGCCGT CGACCTGATG AAGCCCACGG AAATCGACAT CTACGCCAAG
AGCATGGACG CCAACGACGC CATCCTCGCC GAAATCGAGG AGTACAACGA GCACATGGAG
CTCACCGGCG CCAACTCCGC ACCGCTGGCC ACGTCCAACA GCAACAGCGC CCTGCTGGCC
CGAGTGACGT CGGTCACCGG CACCATCGTG CGCGTGCTGG CAGTCCTTAT CGTGATTGCC
CTGGCCATGA GCATGTTCAT GGTGTTCTCG GTGACCTACG TATCGTCCAT CGAGCGCCGC
CGCGAAATCG GCATCCTGCG TGCCATGGGT TCCACCAGGC GCGATATCGT GCGTCTGTTC
GATTACGAGA ACCTGGTCAT CGGCGCATTC GCAGGCGTGG TAGGCACGAT CGTCTCCTTC
CTGCTGCAGC CGCTGCTGAA CCTGCTCACG TTGTTTTTGA CCGCACAGAC CGGGCTGTGC
CACGTGCCGC TGTGGATCGT TTTTCCCGCA GTGCTGCTGG GCGCGCTGAT CGCCGTGCTT
GCAGGCCACA TCCCCGCGCG CCGCGCCGCC GCCAGCGACC CCGTGGAGCT GCTGCACTAG
|
|---|
| Protein sequence | MFELHDISKR YGEGAASHLA LDGVSLAFAE PSLTCILGPS GCGKTTLLNI MGGLDGDFEG
SVSINGVSTS GFSETMWDAY RSTQVGFVFQ EPHLIDYLTV AENVRIALDM ATARSGAAVD
ADAAVARALA DAGIGELGDR LPSELSGGQA QRVAIARALV KEPRIVLADE PTGSLDSANS
AAIMQLLADI AHTRLVVVVT HDRDSAERFA THIIEMNDGK VVSHRRLRAQ TAAAKTTAAH
APRAKAKSAS AVFELARRHL KNKRGRSIIT TLVASIGILC IVLMSAINIG ARAYMDEVAT
NSLISSPIEI KEDGTANALQ SLSFDTGGLL TQGAAEGETP TAVTAGMQAQ IMLYAALENR
QECDLSSFIT HLDLSESDIR DNAFDVQMRY PIELNVYDRN NNQIVKAGKA TILRNIDPST
IFGEQATEII EQKLPDPANL MRQFVINDET GETPYELLAG RYPESYDELV IITARDGSVS
DYFIYAAGIE DYHTLVDAAT DITMGNDFEI PEQTPSYSFD DLLGLTYKVV PTCDYYYKEN
GIWQDGRSQK DFRKKLLADA TELTVVGIVR PNEAIDNGTE IGTLAYDEGL IPYLVDAAND
SEIVQEQLAD PEYDVLTGES FSATPATEAQ RADFENTKQA LLDAMDPELF SDYKRQLIES
LSYSQVIALK QQLGGYMNVD GSLNVSEGDI RQIASLPDST FAAFLEQYAP SSLNAGYKKN
LDALGAVDLM KPTEIDIYAK SMDANDAILA EIEEYNEHME LTGANSAPLA TSNSNSALLA
RVTSVTGTIV RVLAVLIVIA LAMSMFMVFS VTYVSSIERR REIGILRAMG STRRDIVRLF
DYENLVIGAF AGVVGTIVSF LLQPLLNLLT LFLTAQTGLC HVPLWIVFPA VLLGALIAVL
AGHIPARRAA ASDPVELLH
|
|---|
| |