Gene Shel_25860 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_25860 
Symbol 
ID8396474 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2858283 
End bp2859314 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content57% 
IMG OID644987329 
Producturoporphyrinogen-III decarboxylase 
Protein accessionYP_003144940 
Protein GI257065268 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID[TIGR01463] methyltransferase, MtaA/CmuA family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTTCGCAG GAGAGCCCCT CGACCGTCTG CCTATGATGC CCTTCGTCAT TTCCTACTCT 
CCCCGTGTTT TGAACCAGAC TCAACGCTGG TATCGTGAGA GCGCCGAAAA CCGTGCGGCG
TGTCAAATCG CCGCTTACGA AAAGTGGGGG CACGACACGA TGGTTATTGA ATACAGCCTC
CACGGGGTGT CCCATGCGCT CGGCAGCACC TGGACAGACC CCGAAAACGC ACAGACCGCG
ATCGACAAGC ACCGCCTTGA CGACCTTGAT GACGTGGACG GGATCGATTG GGATATCGAT
GCGGTTCGCA AGGAGAACGA TCCGTGGATG CAGATGAACG TCGACGCCGC GCAAATCTGT
CTTGATAGGT ACGGTGACGA AGTGGGCGTG AGCGTCACTC TGCCTGGAGC AATGACCGCG
GCTTCGGGTC TGTATCCCGT CGCTCAGCTG CTTCGAGCGA AGAGAAAGCA GCCCGAACAG
CTTCATAAGC TGCTCAAAAT CTGCAATGAG GCCATAAAAC TCGTATGCGA GGAGTTCATC
AAACTGGGCG CCACCCCGTT CCTGTGCGAC CCGGTCGCTT CCGGCACCAT CATCAACGAG
AAAGAATTCC GCGAGTTCTC GCTGCCCTAC ACTCAGGAGG TTTTCAAGTT CTGCCATGAC
AACGGGGGAG GCTGCGGTTA TCACATCTGC GGTGATACGA CGAAGCTCAC CCAAGCCATG
AGTGAAAGCG GCTGCGACAT GCTCAGCGTG GATGACGCGG TCGACCTTTC GTACGTGAAG
GAGGTCTGCG GCGATAAGCT GCCGCTCATC GGCAACGTAA GCCCAAACGC CACAATGATG
CTCGGCACTC CCGAGGATGT TCGACGCAAC ATCAAGGAGA ACCTCAAAAA GGCATACGAC
TCCCCTTGCG GATACATCGT TGCCACCGGT TGCGACATTC CGCTGCCCGC CCCGATCGAG
AATGTCGATG CTTTCATGGA CGGCGTTCGT GAGCTCGCCC GATATCCGTT CGACCCCGAA
AAGTGGGCAT AG
 
Protein sequence
MFAGEPLDRL PMMPFVISYS PRVLNQTQRW YRESAENRAA CQIAAYEKWG HDTMVIEYSL 
HGVSHALGST WTDPENAQTA IDKHRLDDLD DVDGIDWDID AVRKENDPWM QMNVDAAQIC
LDRYGDEVGV SVTLPGAMTA ASGLYPVAQL LRAKRKQPEQ LHKLLKICNE AIKLVCEEFI
KLGATPFLCD PVASGTIINE KEFREFSLPY TQEVFKFCHD NGGGCGYHIC GDTTKLTQAM
SESGCDMLSV DDAVDLSYVK EVCGDKLPLI GNVSPNATMM LGTPEDVRRN IKENLKKAYD
SPCGYIVATG CDIPLPAPIE NVDAFMDGVR ELARYPFDPE KWA