Gene Shel_25780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_25780 
Symbol 
ID8396466 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2850012 
End bp2850545 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content60% 
IMG OID644987322 
Product2-nitropropane dioxygenase-like enzyme 
Protein accessionYP_003144933 
Protein GI257065261 
COG category[R] General function prediction only 
COG ID[COG2070] Dioxygenases related to 2-nitropropane dioxygenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTTCAGG CCCCCGTTCG TAATTTGTCC GACCCTGGCG TTCCCCACCA AAAGCCGGTG 
GTTACGTTCG TAGGCGAACC GAACAAGTCG ATGATCCGCA TGTTCGGCCA GTTCAAAGAG
CGCGGCATCA AGATTGTCTA CCGCTCGCTC AACCCCACTC CCGAAAACAC CCGCGCCGCT
GAAGAGGCCG GCGCTGACAT CATCGTTGCC ACAGGCTTCG ACGAGGGCGG TACGCTTCCC
AGCATGACGC TCGAGACATT CTCGATTGTT CCCTTGATCA AGGACACAGC GAAAAACGTC
CCCGTGATGG CAGCGGGCGG TATTGCCGAT CGTCGCGCAT TCAACGCCGC CTTTGCCCTT
GGTGCAGAAG GCGTGTACTG CGGCACCGCA TTCCTGATGT GCGAGGAGAG CCGCATGGCA
AGCAACGTGA AGCAGACCCT GCTTTCTGCG AATGCCCGCG ACGACACCCG CCACAGCCAC
GATTCTGCCG GCCATGCAAC GGAAATCCGG ATTCCGGAGC ACTTGAGGGG ATAA
 
Protein sequence
MFQAPVRNLS DPGVPHQKPV VTFVGEPNKS MIRMFGQFKE RGIKIVYRSL NPTPENTRAA 
EEAGADIIVA TGFDEGGTLP SMTLETFSIV PLIKDTAKNV PVMAAGGIAD RRAFNAAFAL
GAEGVYCGTA FLMCEESRMA SNVKQTLLSA NARDDTRHSH DSAGHATEIR IPEHLRG