Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_24340 |
Symbol | |
ID | 8396322 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 2696127 |
End bp | 2698664 |
Gene Length | 2538 bp |
Protein Length | 845 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644987180 |
Product | putative collagen-binding protein |
Protein accession | YP_003144791 |
Protein GI | 257065119 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4932] Predicted outer membrane protein |
TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAGGG GGAGGACTTA CAAACTCATC GCCTGCGTAT GCGCATTTTC GCTCTGCCTT ATCGGATTGG AACCTGCTTT CCAGGCGTAC GCTTACGACG AGGCGGAAAT TGTCGAAGGA TCCACGGTCG AAATCGAATC TGACGAGGAG TCCGTGTACG CGCTGGCCGA AGCCACTGAC ACGTTGACGG TTCCGTCTGA AGATTCGGTC GCATCCGAAT CTGAATCCGA ACTCGAATCT GAATACGAAG ACAGCGAAGA AGACGCTGCA TCGGAAGAAT CCGAGATCGT AGACGACGAG ACGGCAGCGG ATGACGAAGG AACCACGCTG GAATCCGAAG AAGCCGTCGA CGAAGAAGCT GCTGTTGAAG AGGCAGCTCC TGAAGAGGAA GAGGCTCAGG CGGCAATCGA CGAGACGCCG GTTCTGCGTG CAGCCCCTGC AAAAGCCCCT GCCAGGGCAC CGACGTCCAA CGCCCGCATG CCGGAAGAGG GCTATACGCT GGAATACCTG GCCAATCGAG GCTACTCGCT GGTCTGCTTC GAAAACGCGA CCATCGATCA GCACACCATG GGCGGCCTGC TGATCGGCGG CGATATGACG CAAACGACGA GCGCTCCGGG CATTGCCGAC AGCCAGTACG TCGCCGCCCC GTCATATATA GAAGGATATG CCCGCCCGAT TGATACCGGT GTGTTCAACG CCCGGTCGAG GCAGAATCCC GTGCAGCCGC TGTACGTCAG CTCTCGGAAT ACGGTCAGCC CCGACGGGAA GATGCTGAAC GGAGTCGGCA ATAGCGTTTC CGGAGAGGGT TACAACTACC ACGGCCAAGT CGTCGTCAAC GACGGCTACG TGGATTGGGC CAAGATGGAG AAGGCCGCGA CCTCGCTGTC CAGGCAGCTG AAAGACGTGA GCTCCGTTAC GCTCAACGAG TTTCAGGACT GGAGCGAAGT GCCGATCGAT GCCGGCACAA GCGTCACGTT CGAAAACACA GGCGCCAAGC ATGTCAAAGT GAACGTTAAG GGATCGAGCA AGAAGTTCAC TGTCATCAAT ATCCTCGACA GCGGAACCGT GTACGCTCCG CAGGTCATTT CATACAATGG CAGGCAGCTC AGCACCGCAG AGGATGGGGA GGATATGCCC ATCATCCTCA ACTTCCCCAA TGCCACCAAG GTCGTCATAG GCGACCAGAC TCCCGAGCAG GGGCATATCA TAGCCCCTAA TGCCTACGTC GAAATCAATG GCGGCAACTA CAACGGTACG ATTATTTGCA AGAGCGCGAA GCTGAGCGGC CAGGGCCATG TCCGTCGGTT CCATGGCGAC TATCCCGGTC CTGCGCTACA GCCTGTATGG ATAAGCAAGG CAGACTCCCA GGAAACGCCG CTTGCCGGTG CCACGCTGGA GATTGTCGAC AAGAACGGCG AAGTGGTGGA TTCCTTCGTC ACGACCGACG AGCCCTACGG GTTGAAGGTT CTTCCCGGCA CGTACACGCT TCGCGAAAAA GACGTGCCTG CCGGCTACCA GAAGGCAGAA GACATCGCGT TCGAAGTGAG TGACAAAGGC GTCATAACCG TTGACGGCGT TCAGGTTGCA GACAAAACCG TCACCATGAC CGACGAATTC AACCCGGTCA CAGCAAATCT GCAGGCGCAT AAGACGCTCA AGGGCGGCCA GCTGAAGGGC GACGACTTCC AGTTCGTGCT GAAGGACCAA GCCGGCGAAG AAGTCGAAAC CGTGAAGAAC GACGCGCAAG GTTTCGTGCA GTTCTCGCCC ATGACTTTTG ACGAGCCGGG CACGTGGACC TATACGATTT CGGAAGTCGA TGGATCCTTC ACCGACGCGG CTGATTGCGG AGGCATGGCG TACGACGCGA ACGTGTACAC CGCTGTGGTC GACGTGGCCA AGGGTGAAAA CGGCCTCGAG GCGAACGTTA CCTATAAGGA CGCTTCGGGC AACCCGGTTG CAGTGGGTGA CGCAAACAGC GACGGTGCCC CGGTCTTCGT GAACGTGCAG GTCCAGAGCT TGGAACTGCA TAAAGTCGAT GGAACAGACC GCCCGTTCCC CTCTGATCTG AACGCTCTGG TTGCCTTCGA TGTTTCTTAC ACGTCGCCTG AAGGTGCCAC CGAAGTGGTT CAAAGCGGCA TCCATCCCGA TGCGCAGGGC ATCGTGAAAT TCTCGAATCT GAAGCCCGGA ACGTACACGA TTACGGAAAC CGACGCTCCC GACAGCTACA TCAAGCTTGA AGAGCCGATT GTGGTGACCG TGACCTCGGA GGGTGCCATC GAGTTGACAT CCGCTCAGGA GAACGTGGTT TCGCTGGTGG ACGCCGTCAA TGCGGACAGC ACGGCGCAGG CCGCGCCTGG CAAGGTTTTG ATGGTCCGCA ACTATCCTTA CATCGTCATG CCCGAAACGG GCCTTTCGAA TCGGTTGGTA TTCCAAACCC TGGGAGCCAT CGCGATGCTC GTCGGAGCTT GCCTGTATGC AACGACCCGT CGACGAGCGC GCGGCTCCAG CCCGAAGGGG GGATGCGATG GGATCTAG
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Protein sequence | MFRGRTYKLI ACVCAFSLCL IGLEPAFQAY AYDEAEIVEG STVEIESDEE SVYALAEATD TLTVPSEDSV ASESESELES EYEDSEEDAA SEESEIVDDE TAADDEGTTL ESEEAVDEEA AVEEAAPEEE EAQAAIDETP VLRAAPAKAP ARAPTSNARM PEEGYTLEYL ANRGYSLVCF ENATIDQHTM GGLLIGGDMT QTTSAPGIAD SQYVAAPSYI EGYARPIDTG VFNARSRQNP VQPLYVSSRN TVSPDGKMLN GVGNSVSGEG YNYHGQVVVN DGYVDWAKME KAATSLSRQL KDVSSVTLNE FQDWSEVPID AGTSVTFENT GAKHVKVNVK GSSKKFTVIN ILDSGTVYAP QVISYNGRQL STAEDGEDMP IILNFPNATK VVIGDQTPEQ GHIIAPNAYV EINGGNYNGT IICKSAKLSG QGHVRRFHGD YPGPALQPVW ISKADSQETP LAGATLEIVD KNGEVVDSFV TTDEPYGLKV LPGTYTLREK DVPAGYQKAE DIAFEVSDKG VITVDGVQVA DKTVTMTDEF NPVTANLQAH KTLKGGQLKG DDFQFVLKDQ AGEEVETVKN DAQGFVQFSP MTFDEPGTWT YTISEVDGSF TDAADCGGMA YDANVYTAVV DVAKGENGLE ANVTYKDASG NPVAVGDANS DGAPVFVNVQ VQSLELHKVD GTDRPFPSDL NALVAFDVSY TSPEGATEVV QSGIHPDAQG IVKFSNLKPG TYTITETDAP DSYIKLEEPI VVTVTSEGAI ELTSAQENVV SLVDAVNADS TAQAAPGKVL MVRNYPYIVM PETGLSNRLV FQTLGAIAML VGACLYATTR RRARGSSPKG GCDGI
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