Gene Shel_18250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_18250 
Symbol 
ID8395715 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2052095 
End bp2052946 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content62% 
IMG OID644986578 
ProductABC-type Mn2+/Zn2+ transport system, permease component 
Protein accessionYP_003144192 
Protein GI257064520 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1108] ABC-type Mn2+/Zn2+ transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTCGT TTGCCCAACT GGCGGAATAC CTTAGCTACC CCTTCGTCGT GAACGCCATC 
ATCGTGGGCG CGCTTGTGGC CCTGTGCTCG TCGCTTCTGG GAACGACCCT CGTGATGAAA
CGTCTCTCCT ACATCGGTGA CGGCCTGTCG CATGTGGCCT TCGGCGCTTA CGCCGTTGCT
GCGGTTGCGG GCACCACGCG GGAAATGCTG TTCATCGCGC CGGTAACCGT CATCGCCGCC
GTCCTGCTGC TGCGGCGCGG CCAGTCTTCC AAAGTGAAAG GAGATGCGGC GATCGCCATG
ATGTCGGTTA CCGCCGTCGC CGCAGGTTAC CTGATCATGA ACGTGTTCGG CACAAAATCC
AACGTGTCCG GAGACGTGTG CTCGACGCTG TTCGGCTCCA CTTCCATCCT CACGCTGACC
GCCTTCGACG TGGGTGTGTG CGGCGTTATG TCCGTTGCCG TGGTGGGCGG TTTCGCACTG
TTGTACAACC GTATTTTCGC GGTCACGTTC GACGAGGCGT TCTCCCAGGC CATCGGCCTG
CCCGTAGCCC GATACAACCT GGCCGTCGCC ATCATGATCG CCTTCGTCAT CGTGGTGGGC
ATGAATCTGG TTGGCGCGCT TCTGCTTTCC GCCCTTGTGG TGTTTCCGGC GCTGTCCGCC
ATGCGGGTGT GCCGGACCTT CCGAAGCGTG ACCGCTCTGG CCGCCGCCAT CGGCGTGGTG
TGCGCCCTTA TCGGCATTCT GGCATCCATC CTGTTCAGCA CGCCGGTCGG CTCCACCATC
GTGCTGTTCG ACGCCGTCGC CTTCACCCTT TTCTGCCTGG TCGGAAAGCT GTCCGGAAGC
AAAGCCGTAT AA
 
Protein sequence
MSSFAQLAEY LSYPFVVNAI IVGALVALCS SLLGTTLVMK RLSYIGDGLS HVAFGAYAVA 
AVAGTTREML FIAPVTVIAA VLLLRRGQSS KVKGDAAIAM MSVTAVAAGY LIMNVFGTKS
NVSGDVCSTL FGSTSILTLT AFDVGVCGVM SVAVVGGFAL LYNRIFAVTF DEAFSQAIGL
PVARYNLAVA IMIAFVIVVG MNLVGALLLS ALVVFPALSA MRVCRTFRSV TALAAAIGVV
CALIGILASI LFSTPVGSTI VLFDAVAFTL FCLVGKLSGS KAV