| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_18080 |
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| Symbol | |
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| ID | 8395698 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 2039817 |
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| End bp | 2041223 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644986561 |
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| Product | putative efflux protein, MATE family |
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| Protein accession | YP_003144175 |
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| Protein GI | 257064503 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.98273 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAACG GGCCCATTGC GGGAAAGCTC GTGCGGTTCG CCATGCCCAT CGCCGTTGCC
AGCATCCTGC AGCAGCTCTT CAACTCCACA GACTCCGCGG TGGCGGGACG CTTCGTCGGC
GCCGACGCAT TGGCGGCCAT CGGGGGCTCC ATGCCCGTGG TGATGCTGCT CATCAGTCTG
TTCACCGGTT TGGCCATCGG AACGAACGTG GTCGTGGCCA TGCATATCGG CAACGGCAGG
CGCGACCTGA TTTCAGACGC CGTGCATACG TCTATCTTTG TGGCCCTGGT CAGCGGCGCG
CTGCTGCTGA CGCTCGGCAT CGCGCTCGTC GGGCCCATCC TCACGCTCAT CGGCATGCCG
GCGGACGCCT TCGACCTGGC CGTGGTCTAC CTCGTCATCT ACTTCCTGGG CATGCCGTTC
GCGATGCTGT ACAACTTCGG GTCGGCCGTG CTGCGCAGCA AGGGCGACAC CATGCGCCCC
CTGTACGCCC TCATCGTGGG CGCCATGCTC AACACTGTGC TCAACATCGC GTTCGTGACC
GTCCTGCCCT TAGGCGTTGC GGGCATCGGC ATCGCCACGG ACATAGCCAA CGCGGCAAGC
GCGGGCATCG TGCTTTGGTT CCTCATGCAT GAAGAAGGCC CCTACCGTCT GAACTGGCGA
AAGATCCGCC CGAAGAAATC CGAGCTTATG ATCATCCTGA AAATCGGTGC CCCGGCGGGC
CTGCAGGGCA TGGTGTTCGC ATTCTCCAAC GTCATCATCC AGTCGGCCAT CAACAGTTTC
GGCGCCGCAT CCACCGCTGG CGTGGCCGCC GCTTTGAACT TCGAGTTCTA CACGTATTTC
TTCATCAACG CCTTCACCCA GGCGGCCGTC ACCTTCGTCG GCCAGAACTA CGCCGCCCGT
CAGCTCGACC GCTGCGACAG GACCTTCGTC CTGTGCATGG CCTTCGCTAT GGGAAGCGTG
GTGGTGCTCA ACACGGTGTG GCTCACGCTG GGGTCGACGG CCCTGGGCAT CTTCACCACC
AGCGAGCAGG CAATCCGCTA CGGGCTTGCG CGGCTTTGGA CCGGCACGGC GTTTCAGATC
ATCGCCACGG CATACGAACT GGCCGCAAGC ACCATGCGCG GCATGGGCTG GTCCATGACG
CCCACGATCA TCACCGTGAT AGGGTCCTGC GTCCTGCGCA TCATCTGGGT GTTCACCGTG
TTCCAATTCA GTCCCACGTT CACCACGCTC ATCGCGGTCT ACCCCGTGAG CTGGACCGTC
ACCAGCGTAG CCATGCTCGC GGCGTTCTAT TTCGTGCGCA AACGGGCCTA CGGAGCCGTG
GATGCGAGCT ACCTGAAACG CAGCAGCGAG CATGTGGGCA TACGTCGAAA AGTCGTGCAG
GTCCTGCATG CGCCCGGCCT TTCTTAA
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| Protein sequence | MMNGPIAGKL VRFAMPIAVA SILQQLFNST DSAVAGRFVG ADALAAIGGS MPVVMLLISL
FTGLAIGTNV VVAMHIGNGR RDLISDAVHT SIFVALVSGA LLLTLGIALV GPILTLIGMP
ADAFDLAVVY LVIYFLGMPF AMLYNFGSAV LRSKGDTMRP LYALIVGAML NTVLNIAFVT
VLPLGVAGIG IATDIANAAS AGIVLWFLMH EEGPYRLNWR KIRPKKSELM IILKIGAPAG
LQGMVFAFSN VIIQSAINSF GAASTAGVAA ALNFEFYTYF FINAFTQAAV TFVGQNYAAR
QLDRCDRTFV LCMAFAMGSV VVLNTVWLTL GSTALGIFTT SEQAIRYGLA RLWTGTAFQI
IATAYELAAS TMRGMGWSMT PTIITVIGSC VLRIIWVFTV FQFSPTFTTL IAVYPVSWTV
TSVAMLAAFY FVRKRAYGAV DASYLKRSSE HVGIRRKVVQ VLHAPGLS
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