| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_16540 |
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| Symbol | |
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| ID | 8395544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 1860148 |
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| End bp | 1861986 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644986408 |
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| Product | putative glutamate synthase (NADPH) small subunit |
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| Protein accession | YP_003144022 |
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| Protein GI | 257064350 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000430303 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTAAAC TGTCCATTGG ATCCTACGTT GATGACGCGA AGCGCGCCGG CGCCTTCTTG
GAGCCGTACA TGCGTCGCGT CGAGTCGATG CCGCCGGGGA CGTGCCCGAT CGCGGTGCAG
CAGGCAATGC TGCAGACGTG CGCGGCTCAG ACGTGCGGCA AGTGCACGCC TTGCCGTGAG
GGCATTCCTA AAATCCTCGC CGATTACGAG CTGCTGCTCG ACTTCGACGC GGACGCAAGC
GTTGTGGAAG ACATCCGCAA GCGCGCCCAG CTGCTGTGCG ACACGGCAGA CTGCGCCATC
GGCTATCATG CTGGCGAACT GGTCCTGGAG GGCCTCAAAG AGTTCGCAGC CGAGTTCGAC
AGTCATGTGA ACCGCGGCGT GTGCGCCGAC AACAGCGAAC AGACGGTTCC CTGTGTCACG
CTCTGCCCGG CCCATGTGAA CGTTCCCGCC TACATCTCCC TGGTGCAGGA AGGCGATTGC
GCCGGCGCCA TCAAGATGAT TCGCAAGGAC AATCCGTTCC CGACGGCGTG CGCGCTCGTC
TGCGAGCATC CTTGCGAGGC TCGTTGCCGC CGTACCCTGG TTGATGCTCC GATCAACATC
CGCGGCATCA AGAAGTTCGC CGTCGACACC ATCGCTGCCG ACAAGGTTGA AACCCCTGCC
CGCGCAGAAT CCACCGGCAA GAAGGTCGCC GTCATCGGTG GCGGCCCCTC TGGCATGACC
TGCGCATACT TCAGCGCCCT CATGGGCCAT GACGTCACCG TGTTCGAAGG CCGCAAGAAG
CTCGGCGGTA TGATGCGCTA CGGCATCCCT GCGTACCGCT TCCCGCGTGA GCGTCTTGAC
GAAGACATCC GCGCCATCCT GGGCGTGGGC GGCATCGAGG TCAATTACGA GCATGCCGTC
GACGCAGCCG AGATGAAGCG CATCGCCGAT GAGTTCGACG CCGTGTACGT CGCCATCGGT
GCCCAGGGCG GCAAGACGCT GGCCCTCGAC GGCGCCGACG CCGCAGGCGT CATGAGTGCC
GTGGAACTGC TCGGCAAGAT CGGTGACGGC GAGTATCCCG ACTTCACCGG CAAGAAGGTA
GCCGTTATCG GTGGCGGCAA CGTTGCCATG GACTGCGCCC GCACGTCCAT CCGCGCCGGT
GCCGAAGAGG TCACCGTCGC TTACCGCCGT CGTCTCGAGG ACATGACCGC TCTCGACGCA
GAAATCGAAA GCGCCATCGC CGAAGGCATC GAGATGATGT GCCTGCAGGC TCCCGTCCGC
ATCGAGAAGG ACGCCGAAGG CAACGCCTGC GCCCTGATCT GCCAGCCCCA GTACATCGGC
GCTGTCAAGC GCGGCCGTCC GGCCCCCGTC AACGCCGCCA AGCCCGAGAT CCGCATCGAC
GCGGACATCG TGCTCATCGC TGTCGGCCAG GCAATCGAGT CCGCACCCTT CGAAGAGGCC
GGCATGGAAG CCGATCGCAC CTTCTTCGTC GCCGACGAGT ACCTGGCTGT CAAGAATTTC
GACAACGTCT ACGTCGGTGG CGACTGCCAG TGGGGTCCCA AGACCGTCAT CATGGCTATC
GCCGCAGGCA AGACCGCTGC CCGCAACATC GACACGATGC TCGGCTTCGA TCATCAGATC
GACTTCGGCA TCGAGGTCCC GCAGGCCCGC CGCAACGATC GTTGCGCATA CGGTCGCGTC
CAGGTCGCCG AGCGTCCTGC ACGTGAGCGC AAGAACGATT TCGATTACGT TGAGTGCCCT
GTCAGCGCCG AAGAAGCGGC GCAGGAATGC GGTCGCTGCC TCCGCTGCGA CGTGTTCGGC
ATTGGCGCTC TGACCGGAAG GGGACTTGAG CAATGGTAA
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| Protein sequence | MGKLSIGSYV DDAKRAGAFL EPYMRRVESM PPGTCPIAVQ QAMLQTCAAQ TCGKCTPCRE
GIPKILADYE LLLDFDADAS VVEDIRKRAQ LLCDTADCAI GYHAGELVLE GLKEFAAEFD
SHVNRGVCAD NSEQTVPCVT LCPAHVNVPA YISLVQEGDC AGAIKMIRKD NPFPTACALV
CEHPCEARCR RTLVDAPINI RGIKKFAVDT IAADKVETPA RAESTGKKVA VIGGGPSGMT
CAYFSALMGH DVTVFEGRKK LGGMMRYGIP AYRFPRERLD EDIRAILGVG GIEVNYEHAV
DAAEMKRIAD EFDAVYVAIG AQGGKTLALD GADAAGVMSA VELLGKIGDG EYPDFTGKKV
AVIGGGNVAM DCARTSIRAG AEEVTVAYRR RLEDMTALDA EIESAIAEGI EMMCLQAPVR
IEKDAEGNAC ALICQPQYIG AVKRGRPAPV NAAKPEIRID ADIVLIAVGQ AIESAPFEEA
GMEADRTFFV ADEYLAVKNF DNVYVGGDCQ WGPKTVIMAI AAGKTAARNI DTMLGFDHQI
DFGIEVPQAR RNDRCAYGRV QVAERPARER KNDFDYVECP VSAEEAAQEC GRCLRCDVFG
IGALTGRGLE QW
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