| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_10480 |
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| Symbol | |
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| ID | 8394939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 1193338 |
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| End bp | 1194723 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644985806 |
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| Product | Na+-driven multidrug efflux pump |
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| Protein accession | YP_003143432 |
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| Protein GI | 257063760 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000234948 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTGTTG ACATGTCTCG GCATTTCACG TTGCCGCAGC TCATACGATT TACTCTTCCC
ACCATCGGCA TGATGCTGTT CATGTCGCTC TATGTGATGG TGGACGGGTT CTTCGTCTCG
AACTGGTGCG GCCAGACGGC ACTTGCGGCC GTGAACTTCG CGTATCCCAT TCCCATGATT
CTGGGCACGT TGGGGTTCAT GTTCGGCACA GGCGGCAGCG CCATCGTCGC AAAGACGCGA
GGCGAGGGGG ACGACGCCCG CGCGAATCGG CAGTTTTCCT TGCTGGTGTA CGCTGCCATC
GTTGCTGGTG CGGCATTCGC TGCGCTGGGT GTGTTGTTGC TACGTCCCTT GCTTGTGGCG
CTGGGTGCGC AAGGGGAAAT GCTCGATCTA TGCATGGTTT ACGCCATGCC TCTCGTGATG
GGCGTGCCTG CAACGGTTCT GCAATACCTC TTCCAGGAGC TATTGGTGAC GGCCGGTAAG
CCTGAGCTGG GGTTCGGCGT AACGGTTGCC GCCGGATTAA CGAACATCGT GGTCGATGCC
GTTCTTATCG CACTGCTTGA TTTTGGTGTG GTCGGTGCTG CAATCGGCAC CATTGCCGGC
GAGGCTGTGG GTGGCATCAT CCCGCTCGTC TACTTCGCAC GACCCAACAA GAGTTTCTTG
CGGCTGGGTC GCACGAACAT GGACTGGAGG ATGTTGGGGC ATGCGTGTGT GAATGGGTCG
TCTGAGATGG TCTCAAACAT CGCTATGTCG TTGGTTTCCA TGGCCTACAA CGTGCAGCTT
CTCGTGTATC TGGGGGAGTC GGGGGTGGCG GCCTATGGCG TCATCATGTA CGTGGGCATG
GCGTTCGTCG CCGTGTTCAT GGGCTACGTT TTCGGGTCGT CTCCTTTGAT GAGCTTCCAA
TACGGCGCCA ACAACAGAAT AGAGATGCGC AGTCTCTTCC GTAAGAGCCT GCTGTTCGTC
TCGATCTGCG GTGTGGCCAT GTTCATAGCC ACCCGAGTGT TCGCACGCCC GTTGGCGCTC
GTGTTCGTGG GCTACAGCGA AGGCCTTGCC GAGCTTACCG TGCACGCGAT GCTTCTGTAT
TCGGCGTCGT TGCTGATTGT CGGCTTCAAC ATGTATGGAT CGGCGTTGTT CACAGCGCTT
GGAAACGGCC TGGTGAGCGC CATCATTTCG TTTGTTCGGA CGTTGATTTT CGAAATCGGC
GCCGTGTTTT TGCTGCCGAC GCTTTTCGGA GCTGACGGCA TATGGGTGTC GGTAGTGGTG
GCGGAGGCTG CGGCACTTGT GCTCACCACG ACATGCATCC TGGTTCTCGA ACCCCGGTAC
GGTTACATCC GCACAGACGC GGATGTCTCT AAAAGAAGCG GCAACAGCTC TGATGGACAT
GTTTAG
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| Protein sequence | MPVDMSRHFT LPQLIRFTLP TIGMMLFMSL YVMVDGFFVS NWCGQTALAA VNFAYPIPMI
LGTLGFMFGT GGSAIVAKTR GEGDDARANR QFSLLVYAAI VAGAAFAALG VLLLRPLLVA
LGAQGEMLDL CMVYAMPLVM GVPATVLQYL FQELLVTAGK PELGFGVTVA AGLTNIVVDA
VLIALLDFGV VGAAIGTIAG EAVGGIIPLV YFARPNKSFL RLGRTNMDWR MLGHACVNGS
SEMVSNIAMS LVSMAYNVQL LVYLGESGVA AYGVIMYVGM AFVAVFMGYV FGSSPLMSFQ
YGANNRIEMR SLFRKSLLFV SICGVAMFIA TRVFARPLAL VFVGYSEGLA ELTVHAMLLY
SASLLIVGFN MYGSALFTAL GNGLVSAIIS FVRTLIFEIG AVFLLPTLFG ADGIWVSVVV
AEAAALVLTT TCILVLEPRY GYIRTDADVS KRSGNSSDGH V
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