| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_09890 |
|---|
| Symbol | |
|---|
| ID | 8394880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 1132149 |
|---|
| End bp | 1132691 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644985748 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_003143375 |
|---|
| Protein GI | 257063703 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00132377 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAAACTCA ATACACTGCC TGTGGTTACC TATCCGGATC CTACGCTGCG CGAGGTGTGC
GTCCCTTGCG ACCCGTCTGA CAAGAGCCTG AAGAAGTTGG CCCGCCAGAT GGCCAACACC
ATGTATGCCA ACAATGGATG CGGCCTGGCT GCACCGCAGG TGGGCGTCAA CAAGCGCATC
ATCGTCATCG ACTGCGACCA GGACAGCGGC ACGCGCAATC CCATCACGCT TCTCAACCCC
GAGATCATCG AGACTCGCGG ACCCGAAGAG CTGGATGGCG AAGGTTGCCT GTCCTGTCCG
GGCATCACCG TGGAGATCCG CCGTCCCACC TATGCCATCG TGAAGTACAC CGACCTGAAC
GGCGAGGACT GGATCATCGA GGGCGACGGT CTTTTGGGCC GCTGCCTGCA GCATGAGATT
GACCACCTCA ACGGCATCAC GCTGTTCGAG TCTTGCGACA TGAACGCCCG CATCAAGGCG
CTCAAGGACT ACAAGGCGGC GCAGCAGGCG GGCGCCAAAC CTGGCGACAC CAGCGTCGAA
TAG
|
|---|
| Protein sequence | MKLNTLPVVT YPDPTLREVC VPCDPSDKSL KKLARQMANT MYANNGCGLA APQVGVNKRI
IVIDCDQDSG TRNPITLLNP EIIETRGPEE LDGEGCLSCP GITVEIRRPT YAIVKYTDLN
GEDWIIEGDG LLGRCLQHEI DHLNGITLFE SCDMNARIKA LKDYKAAQQA GAKPGDTSVE
|
|---|
| |