| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_09390 |
|---|
| Symbol | |
|---|
| ID | 8394830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 1084341 |
|---|
| End bp | 1085345 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644985698 |
|---|
| Product | tRNA pseudouridine 55 synthase |
|---|
| Protein accession | YP_003143329 |
|---|
| Protein GI | 257063657 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.86572 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTG GGGAAAGCGG CCTGTCGCTT GTAGTGGGCG TGGACAAGCC TAAAGGCATG
AGTTCCCATG ACGTGGTCAA CCGGTGCCGC CGCATCTTCG GCGAGCGCCG CGTGGGCCAT
ACCGGAACGC TCGACCCTTT GGCAACGGGC GCCTTGGCGG TGTGCATCGG GCCTGCTACC
AGGCTTGACG CGTACTTCGT CAACCACGAC AAGGTCTATG ACGTGCGAAT AGCCTTCGGT
ACGGCAACCG ACACCGACGA CAGGTGCGGC CAGGTCATCC GTACGGCCGA GGTGCCGCCC
GAGCTGTCTG ACGAGACCCA GGCCAGAGCC TTTCTCTTCA CATGTCTGGG CAAGCAGCTG
CAGACGCCGC CGCAGTATTC GGCCATCAAA CGCGACGGCA AGCGCGCCTA CGAGGCCGCC
CGTGCCGGCA ACGTCGTCGA GCTGGATGCC CGCGAGATTA CCGTGTACGC CGCCGACCTG
CTGCAAACGG GCCGCACCGA GGACGGCGTC CTGTTCTGGG ACGTTCGGTT CGGCGTTTCC
AAGGGGACGT ACATCCGCTC GCTGGCCCGG GACATCGGAG TTCGTCTGGG GACGGCCGCC
CACGTGTCGG AGCTTCGCCG CATCGAGGCG GGCGGGCTGC ATGTGGACCA GTGCGTGACT
CTGGAGGAGC TGGAGGCCGC AGGCCCGAAG GCGGCCATCG ATCCCGTGCG GCTGCTGGGC
TTCCGCACGG CGTTTCTCAA CGAGCGGCAG CAGGCCGACG TGGCCAACGG AAAGCGTCTG
CCTGCGAAGA CCCTGCAGCT GTTCGAGGCG CCCCGGAACG ACCAGGGCGA TTGCTGCATG
ACGGCACACG CCAAACGGTC GAGTGCGCCT TTGGCGGACG GCGAGACCAT AAGCATGGTC
GCAGGCAATA CATTGGTTGC CCTCTATTCC GCACAGGTGA ATCGTGGTAT GGTTTCACCC
TGCTGCGTCT TTGCTCAAGG AGTGTATCGT GGGTCTAATA TATAG
|
|---|
| Protein sequence | MKRGESGLSL VVGVDKPKGM SSHDVVNRCR RIFGERRVGH TGTLDPLATG ALAVCIGPAT
RLDAYFVNHD KVYDVRIAFG TATDTDDRCG QVIRTAEVPP ELSDETQARA FLFTCLGKQL
QTPPQYSAIK RDGKRAYEAA RAGNVVELDA REITVYAADL LQTGRTEDGV LFWDVRFGVS
KGTYIRSLAR DIGVRLGTAA HVSELRRIEA GGLHVDQCVT LEELEAAGPK AAIDPVRLLG
FRTAFLNERQ QADVANGKRL PAKTLQLFEA PRNDQGDCCM TAHAKRSSAP LADGETISMV
AGNTLVALYS AQVNRGMVSP CCVFAQGVYR GSNI
|
|---|
| |