| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_09000 |
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| Symbol | |
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| ID | 8394791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 1039395 |
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| End bp | 1041890 |
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| Gene Length | 2496 bp |
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| Protein Length | 831 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644985659 |
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| Product | DNA-binding transcriptional activator of the SARP family |
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| Protein accession | YP_003143293 |
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| Protein GI | 257063621 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3629] DNA-binding transcriptional activator of the SARP family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00178339 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGCAGG AGCGCGGTGT CCCCCGCATA CTTGTGGCGC CCACGGGGTT CGGGAAGACA
TCGTTGGTCG CCGAATATGC GCAGGACATC TTCGAATTCA GAAACACGTT TTGGATCGAT
TGCACCGATC CGTGTTTTCT GCGGGAGCTG GATGCCAAGC GGTTGGGGCT TCAGCTCGTG
GAGGCCGGCG GCGAAGGCTT TCTCGCCGTG TTCGACGACG TGCCCTATCT GGACGATGCC
CGTGCCGAAG AGTTCTCCGA AACCATCGAC AGCCTGGTGG ATTCGGGGTG GGAGGTCGTC
GTGTCGACAA CACCCGCGTT CTCTTCCATC CTCGATCACC AGACGGTTTG CGTGCGTGTG
ACCGCTGAGG ACCTGCTCGT CGACGATATG GAATACGAAG GGTCGAAGGA CCTGTCCTTT
ATGGACAAAC GGGTTCCCAT GAAGGACGTC CGCCGCCAGT CGCGCGTGCC TGCCTTGGTT
TGGGGGATGC GTCCCGACGT GGACCGGTTC GCCTTGCATT TGGTCGACGA CCTTCCGATC
GAGCTTCGGC TGTCGCTGTT CATCATGCTG GTGCTACAGC ATGGCGTTAT GGAGGACGTG
ACCATCTTCG GACGCGGCGT GAAGAAGGAC ACGAGGCGTT TCTTTATGGA GAGCTACCCG
TTTCTGGGCG TCAATACGGT TTCGGAGAGT TTCGATGCAT GCATCATGGA CATCGGCCAC
GTTAGGATGG CTTTCGGCGG CTGCCTGGAT GAGATGGTGG CACACTCCTC GAACATGAAC
GTGGACTCCC TGATTCAGAA AATGGCGGAC TATCTGGTGT CGAAGCGCCG CTACTTGCGC
GCATGCGAGG TCATGAGCAC GTTCTGCTCG CGGTCGAAGC GGGCGTCCTG GCTTACCCAG
AAGCAAGGCA TGCTTCTGCG CGTGGGCCAG CCGCTGCTGG TTCTGGACCT GTACGAAAGC
CTGGGCGAGG GCAAGGGGGC CTGTTCGGCC GAGTTGACGC TGGCCGCCTC CTATGCAGCA
GCCCTGCTCG ACGACGATGG CCGGTGCGTT CGCTATGCCC TTTCCGTCGG CTCCGACCCC
CAGGCCCTGC CTTGGCAGCG GGTGCTCGGG TGCTGCCTGT GCGTGGCCCG CGGCAAGGCG
GAAACCAAAC AGGGGGCAAT CGATGGACTC GAGAAGATGA TCTCCGAGAG CCCGTTTGAC
GGGTACAAGG GGAAAGACGC TCCGCTAGTG AGTGCCCAGG CCATGCAAAC CATGCTTCGT
GCCATGTGGG ATGTGGGGAT GGATGACATG CATTACGAAA GCGAACTGGA GGAATGCGCG
GATGACCTGC CGAAAAGCCG CGTTGGCGTC CTGATTCTCA TCCAGGCGCT GCAGGCGTCC
GAACGGCGCG GCGCCCAGCA GGTCCCACTG GCAGACGGCG ACCTCATGTC AAACGCGATG
CACCTGTCCG ACATCGCGCG CGGCTGTTTG TCGACCCGGC GCAGGAAGCT CATGATCCCC
GACATGCTGG AAGCGCTGCT CTGCGAAGCT ATATGCAACC ACGCCGACAC GTACCGTGTG
CCGCGCCCAG AGACCTCCCC GGAGCGCCAG CACTACATCC GCCTGCTTGT GAACTCCCTC
GAAGGGCAGA AGAAAACCGT ACGCGCGCGG ATGGAGGATG TGGGCGCACC TGCCCAGATC
GTTGCGAGCC AGGTGACGCC GGTCCAGGTC ATCGATCAGG TTCCTCCGAT GTACCTGCGG
CTGTTCGGCG GCTTGCAGAT ACGCATAGGG GATACGGACC TGGGGCCGGA CGACCTGAGG
AAGGCGAAGA CCAAGACGCT GCTCGCCGTG CTCGCCCTGG CGCATTGCCG GGAGGTGCCG
CGCATGCGAA TTCTGGAGGT GATGTGGCCT GGTTCGCCCA AGAAGAAGGC GCTCAACAAC
TTCTATTCCC TCTGGTCGTC GCTGCGCCAC TCGTTGGAGC TGGAAAGCGG GGAGTGCCCG
TATCTGGTCC GGCACCAGCT GAGCTGTATG CTGGACGGCC GCTACGTCAC GAGCGATGTC
GACGAGCTGG AGAGGTTGTG CGGCAGGCTC ATGTTCGACG ACCCTGACCC GGATGCCTGG
ATGCCGATTT ACAAGGTGAT CCAGAACCAG TTCTCCAACG ACCTCATGCC GGCCGAGGAA
AACAACGCCT ACATCATCTC GATGCGCGAA TTCTACCGTT CCCGGATCAT CGACTCGTTG
GTGCACGGCG CGAACCGTCT GTACGACATC CAGGAGTACC AGGCCGCGCT GTGGTTCGCC
AGGGCGGGGT TCGAACGCGA TTCACGGAGG GAAGACACGT GTTGCGCGCT GATGAAGGCG
CAGATTGCAA ACGGTCAGTC GGACGCGGCG GTATCCGTGT ACATGCACCT GTGCTCGTAC
CTGAACGAGG AATTGGGCAT CGACCCCTCG GCGCAGGCGC GCCGTCTGTA CGAGCGGGCG
ATTCTGTGCT CCGATGATGG TTCTTTCCTT GGGTGA
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| Protein sequence | MLQERGVPRI LVAPTGFGKT SLVAEYAQDI FEFRNTFWID CTDPCFLREL DAKRLGLQLV
EAGGEGFLAV FDDVPYLDDA RAEEFSETID SLVDSGWEVV VSTTPAFSSI LDHQTVCVRV
TAEDLLVDDM EYEGSKDLSF MDKRVPMKDV RRQSRVPALV WGMRPDVDRF ALHLVDDLPI
ELRLSLFIML VLQHGVMEDV TIFGRGVKKD TRRFFMESYP FLGVNTVSES FDACIMDIGH
VRMAFGGCLD EMVAHSSNMN VDSLIQKMAD YLVSKRRYLR ACEVMSTFCS RSKRASWLTQ
KQGMLLRVGQ PLLVLDLYES LGEGKGACSA ELTLAASYAA ALLDDDGRCV RYALSVGSDP
QALPWQRVLG CCLCVARGKA ETKQGAIDGL EKMISESPFD GYKGKDAPLV SAQAMQTMLR
AMWDVGMDDM HYESELEECA DDLPKSRVGV LILIQALQAS ERRGAQQVPL ADGDLMSNAM
HLSDIARGCL STRRRKLMIP DMLEALLCEA ICNHADTYRV PRPETSPERQ HYIRLLVNSL
EGQKKTVRAR MEDVGAPAQI VASQVTPVQV IDQVPPMYLR LFGGLQIRIG DTDLGPDDLR
KAKTKTLLAV LALAHCREVP RMRILEVMWP GSPKKKALNN FYSLWSSLRH SLELESGECP
YLVRHQLSCM LDGRYVTSDV DELERLCGRL MFDDPDPDAW MPIYKVIQNQ FSNDLMPAEE
NNAYIISMRE FYRSRIIDSL VHGANRLYDI QEYQAALWFA RAGFERDSRR EDTCCALMKA
QIANGQSDAA VSVYMHLCSY LNEELGIDPS AQARRLYERA ILCSDDGSFL G
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