| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_04940 |
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| Symbol | |
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| ID | 8394386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 580950 |
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| End bp | 583601 |
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| Gene Length | 2652 bp |
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| Protein Length | 883 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644985257 |
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| Product | putative collagen-binding protein |
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| Protein accession | YP_003142903 |
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| Protein GI | 257063231 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4932] Predicted outer membrane protein |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACAA GGAAACGGGG ACCGCGCCTT GTCGCGTCGC TGCTCAGCGT TCTGCTTGCG
GTAAACTGCC TGAGCGTTGC AAGCTTGGCA TTCGCATCCG AACCGCTTGA TTCGGAAGAG
CCTGCGGCTG TCGTACAGCC TGTCGATGGG GATACTGCTG TTTCGACGCT GGAAACGGCC
GAAAGTGACG AGGCCGAGCA GTCTGCAGCC CAGGACCAGC CGGTTGGAGC CGAGGTCGAG
GCTGACACCG ACGCCGCAGC CGCAGCCGCT GCGGAAGGCG ATTCCCGAAG CCAAGAGGCC
GCCGACGAGC AGCCCAAAGC GGAAGCGTCC GACGCCTCTG ATGCAAACGA CGAGGCCGTG
ACCGTGCAGG CGGAAGGAAC CGACGATTCC GCCGTTGTGA CGCTTGCGGT TCAGAACAAC
GTCATCACCA GTTTCGAAGC TTTGCTTCAG GACGGAAGCG GGCCTGTCGG CAACGTGAGC
CAGTGGCAGG TCTTCCGCAT GAAAGGCAAC TTCGAGCTGC CTAACGGGCA GGTGCATGCA
GGCGACACTA CCACCATCAC CCTTCCCGAA AAGCTGAAAT TCAATCAGAC CGCGGCATTC
GACATCACCG ACGAGAACGG CAATGTCATC GGCCAGGCCG TTATTGACGG AGCGAACAAA
ACCGTGACGA TCACCTGGAC CGATTTCGCC GAAACGCATT CCGATGTGTC GGGCGACTTT
TATTTCTACG TCCAAATTGA CCGCAATATG GTGGATGAGG CGGAGGACAT CCCGCTGAAT
TTCGACGTGA GCGGCAACGT GGTGTACGGC GGCGACATCC ACTTCATCGG CATTCCCGAT
CCTGCTCCGT ATTACATGAG CAAGAACGGA TATCAGGTCC AGGGCAAGCC CAGGTACATC
CATTTCCAGA TTCCGATCAA CACTATCGGT GCAGATATCC AGAACGCGAA GCTGACCGAC
GGGGTAGTGA ACCCCGGCCT GACCATCGAC GCGAGTTCCT TCAGGATTCT GGAAGGCACG
TGGGTCAAGA TCAAGGGCGA CTGGGAACTG CAGAACAGGA CCGATGTCAC GTCCAACTAC
ACGGTTCAGT TCTCCGACGA TATGAGGTCA TTCACCCTCG ACATGGGTAC CATTTCCGCC
AGCCAGGGCT TCTACGTCAT CTACGATACG GTGGCATCCT ACGACCTGGT AGACGGCGAG
GTCATCCGCA ACGACGCGAC CTTCACCGGC AACGGCTCGG AGCTGCGTCA CATATCTGCA
ACGGCCACGT ACTTTGAAGC CGGCGGATCG GCTGTCGGAT ACGTGTACGC CATCAACGTG
CGCAAGGTGG ACGAAGACGG AGCCGCGCTT GCGGGAGCCC AGTTCAACGT GGTGCGCGTA
GCCAACGGAG CCGTCGTGGG CACCATCACC ACCGACGCGA GCGGCAACGG CTCGCTTTCC
GGCCTGCTGA AGGACGACTA CCAGCTGGTC GAAACCGTGG CGCCTGTGGG ATACACCCTG
CTGAGCGAGC CGGTCGACGT GTCGGCAGGT TCGTTCGACA GCAACAAGAC GGCCAACGTG
GTTGTCGAGA ACAGCCTGGA GAGGACGTCC ATCCCCGTTT CGAAGGTGTG GGTCGGACCC
GCAGCGGGTT CCGTCACCAT GAGGCTGATG GCCGACGGTG TCGAAACGGA CTCTCTGGTC
CTTTCCGAGC GGAACAACTG GCAGGGGTCC TTCGACGACC TGCCGGTGTA CGACCCGGTG
GACGGGCATG AGATCACCTA TCTGGTGACC GAAGACGACG TGGACGGCTA TTCGCAGGAA
TTCACGGTGG CCGAAGATGG CTCGTACGTG TTCACCAACA CGAATAACGA AATCGTAATT
GTGAACGGCA CGAAGACCTG GGACGACGCC GACGACCAGG ACGGCATGCG CCCCGAAAGC
ATCACGGTCC GTCTTTTGGC CGACGGAGTT GAGATAATGC AGGATACCGT TGGCGCCGAG
GACGACTGGT CCTGGGAGTT TGCGGCTCTG CCCAAATATG ATCTGGTCGA CAATCACGAG
ATTGCCTATA CCGTGACCGA AGACGCAGTT GAGGGGTATT CCCCCGAATA CAACGGGTTC
AACGTTACGA ACAAGCACAC CCCGGACAAG ACCAGCGTCA CCGTTGTGAA GGCGTGGGAC
GATGCGGACA ACAAGGACGG CATCAGGCCT GACCAAGTGA CGGTGCGCCT GCTGGCCAAC
GGTGAGGACA CGGGCAAGAG CGTCGTGCTG AACGCCGAGA ACAACTGGGA GGCCAGCTTC
GGCGACCTGG ACCTCAAGGC CGGCGGCACG GCCATCGTCT ACACCGTGGC CGAGGATGAG
GTCGACGGCT ACACCGCTGT CATCACGGGC GATGCGCAGA CCGGATTCGT TATCACGAAC
ACCCATGAGC CGGTTGTTCC GCCTACGCCG CCGAGTGTGG AGAAGCCGAC GGACACGCCG
AAGGATACTC CGAAGGACAT GCCGAAGAAA TCGGTCGAGC AGCCGAAGAC CAAGTCCAAG
GCAAAACCGT CGATTCCCAA GACCGGCGAT GATCTTGCAC CCGGCATGCT CGCCCTTGGT
GCATTGGCCG TGGCTGGAGC CGGTTGCCTT GTTTGGGCTC GCAGAACGAA GCGCAACCTG
CAGGATAGGT AG
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| Protein sequence | MNTRKRGPRL VASLLSVLLA VNCLSVASLA FASEPLDSEE PAAVVQPVDG DTAVSTLETA
ESDEAEQSAA QDQPVGAEVE ADTDAAAAAA AEGDSRSQEA ADEQPKAEAS DASDANDEAV
TVQAEGTDDS AVVTLAVQNN VITSFEALLQ DGSGPVGNVS QWQVFRMKGN FELPNGQVHA
GDTTTITLPE KLKFNQTAAF DITDENGNVI GQAVIDGANK TVTITWTDFA ETHSDVSGDF
YFYVQIDRNM VDEAEDIPLN FDVSGNVVYG GDIHFIGIPD PAPYYMSKNG YQVQGKPRYI
HFQIPINTIG ADIQNAKLTD GVVNPGLTID ASSFRILEGT WVKIKGDWEL QNRTDVTSNY
TVQFSDDMRS FTLDMGTISA SQGFYVIYDT VASYDLVDGE VIRNDATFTG NGSELRHISA
TATYFEAGGS AVGYVYAINV RKVDEDGAAL AGAQFNVVRV ANGAVVGTIT TDASGNGSLS
GLLKDDYQLV ETVAPVGYTL LSEPVDVSAG SFDSNKTANV VVENSLERTS IPVSKVWVGP
AAGSVTMRLM ADGVETDSLV LSERNNWQGS FDDLPVYDPV DGHEITYLVT EDDVDGYSQE
FTVAEDGSYV FTNTNNEIVI VNGTKTWDDA DDQDGMRPES ITVRLLADGV EIMQDTVGAE
DDWSWEFAAL PKYDLVDNHE IAYTVTEDAV EGYSPEYNGF NVTNKHTPDK TSVTVVKAWD
DADNKDGIRP DQVTVRLLAN GEDTGKSVVL NAENNWEASF GDLDLKAGGT AIVYTVAEDE
VDGYTAVITG DAQTGFVITN THEPVVPPTP PSVEKPTDTP KDTPKDMPKK SVEQPKTKSK
AKPSIPKTGD DLAPGMLALG ALAVAGAGCL VWARRTKRNL QDR
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