Gene Shel_04420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_04420 
Symbol 
ID8394334 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand- 
Start bp526702 
End bp527265 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content58% 
IMG OID644985206 
Producttranscriptional regulator, tetR family 
Protein accessionYP_003142852 
Protein GI257063180 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones8 
Fosmid unclonability p-value0.00197564 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTCAAGG ACCGGACGAA GAAACTGTTC GCGGCAGAAC TGGAGAACAT GCTTACCGAG 
ATGCCCCTCG AGAAGGTGCG CGTGAAGGAC CTCTGCGAAC GTTGCGGAGC GCAACGCCAG 
GCCTTCTATT ACCACTTCAA GGACAAATAC GACCTGGTCG CATGGATATT CGAGCAGGAC 
TTCCGCGCCG GTATGGAAGA GACCGCCCTG ACCGACTACC GCGAGCAAAC CGCAGCCGCC 
CTGGCGCACA TGTGGACCCG CCGGTCGTTC TACCGCAAAG CCTTCGCGGA CAAGTCCCAG 
AACTCCATCG AATCCTACAT TCAAGCGTTC GACGTCGAGA TGAGCAGTCG CGTGGTGCTG 
AGGCACTCCG GTGCAAAAAC CCTTTCTGAA CAGCGTCTTT TCGATATCAA ATTCCAGTCA 
TACGGCAGCA TCGGCATTAC CGTCGAATGG CTCCGCGGCG AGCTGGAATC CACGCCTGAG 
AAAATCGCCA ACTGGGAATA CGAGCGCATG CCGAAGTTCA TGCGCGACGC CTACGACGCT 
GCAGTCCGCG AAGGCATCCA GTAG
 
Protein sequence
MFKDRTKKLF AAELENMLTE MPLEKVRVKD LCERCGAQRQ AFYYHFKDKY DLVAWIFEQD 
FRAGMEETAL TDYREQTAAA LAHMWTRRSF YRKAFADKSQ NSIESYIQAF DVEMSSRVVL 
RHSGAKTLSE QRLFDIKFQS YGSIGITVEW LRGELESTPE KIANWEYERM PKFMRDAYDA 
AVREGIQ