| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_03920 |
|---|
| Symbol | |
|---|
| ID | 8394284 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 465708 |
|---|
| End bp | 466658 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644985156 |
|---|
| Product | 2-nitropropane dioxygenase-like enzyme |
|---|
| Protein accession | YP_003142802 |
|---|
| Protein GI | 257063130 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.62232 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.810492 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGGG TATGCGAGAT TCTGGGAATC GAGAAACCGG TGGTCCATGC CCCGATGCTG
TGGCTGACCA GCCCTGAACT GGTTGCCGCT GTAAGCAATG CGGGCGGTTT GGGTGTAATC
GGCGTCGGCG CGGGATCTAC CGAGCCCGAG GCTACGCGCG AAGCCACAAA CGAGGCGTTC
CGCACGGCCG TGCGCCGCGT GAAGGAGCTG ACGGACAGGC CCTTCGGTGT GAACCTGATG
ACCGCGGCGT CCGACCCCAA CGGCCACAAT GCCGACACTA TCGCCATCAT GAAGGAGGAG
GGCGTGGCTG TGGTCGTGCT CGTGGGCGAC GTGTTCGCCG ACGGTGAGAT TGCCGCGCTC
AAGGCCGACG GCTTCAAAGT GGTTGCACGC CAGCTCAACC CCACGGTTGC GGGTGCCAAG
CGTCTTGAGG AGCTGGGCGC GGATGCCATA GTGGCCACGG GCTGCGACGA GGGCGGTGTC
ATGCCGGCCG GCGCGACGGG CACCATGGCG ATGGTGGCCC TCATGTCCGA GGCCGTGGAC
ATTCCCGTTC TGGCAGCGGG CGGCATCGTC AACGAGAAAT TCGCCCGTGC CTCCGCCGTG
CTGGGTGCCG AGGGCGCTTT CGCCGGCACG CGTTTCATCC TGTCCGAGGA GTGCCGCGCA
GCGCAGGCCA CCAAGCAGGA CCTTCTGGAC GCTTCGGCCG ACGACATGGT GACGATCACC
GTTTGGGGCG GCGGCGGACG CTGGCGCACC ACTCCCACGG CCAAGGCCGT TGCGGCCGCG
CAGGCCAACA TGGCTGGCGA TCTCAACCCT GACCAGGGAG ATTACCGCAA GAGCGAGCTT
TTGGGCCAGC TCGACGAGGG CATCAACTCC GCGAGCAGCG TCGTCTCCCT GGTGAAGAGC
ATCGACTCCT GCTCCGACAT CGTGGCCGAC CTCGCCCGTG GCTACGAATA G
|
|---|
| Protein sequence | MSRVCEILGI EKPVVHAPML WLTSPELVAA VSNAGGLGVI GVGAGSTEPE ATREATNEAF
RTAVRRVKEL TDRPFGVNLM TAASDPNGHN ADTIAIMKEE GVAVVVLVGD VFADGEIAAL
KADGFKVVAR QLNPTVAGAK RLEELGADAI VATGCDEGGV MPAGATGTMA MVALMSEAVD
IPVLAAGGIV NEKFARASAV LGAEGAFAGT RFILSEECRA AQATKQDLLD ASADDMVTIT
VWGGGGRWRT TPTAKAVAAA QANMAGDLNP DQGDYRKSEL LGQLDEGINS ASSVVSLVKS
IDSCSDIVAD LARGYE
|
|---|
| |