| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_02560 |
|---|
| Symbol | |
|---|
| ID | 8394148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | - |
|---|
| Start bp | 310664 |
|---|
| End bp | 312280 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644985027 |
|---|
| Product | phosphoenolpyruvate carboxykinase |
|---|
| Protein accession | YP_003142673 |
|---|
| Protein GI | 257063001 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1866] Phosphoenolpyruvate carboxykinase (ATP) |
|---|
| TIGRFAM ID | [TIGR00224] phosphoenolpyruvate carboxykinase (ATP) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.128993 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAC TCGATCTGAC CCGATACGGC ATAACCAATG CCTCCGAAAT CATCCACAAC
CCGTCCTACG ATTTCCTTCG TGACGAAGAG CTGCGAAGCG ACCTTTCCGG TTACGAGAAA
GGCCAGCTCA CCTGCATGGA CGCCGTCAAC GTCATGACCG GTGTGTACAC GGGGCGCTCG
CCGAAGGACA AATACCTGGT CGCAGACGAG AATTCCCGCA ACACCGTATG GTGGACCTCC
GACGATTTCG AAAATGACAA CCATCCCATG AGCCCCGCCG TGTGGGACGC CGTCAAGCGC
CGCGCGCTGG AACAGCTCTC CGGCAAGCGC CTGTTCGTGA TGGACGCCTT CTGCGGCGCC
GACGAAGACA CCCGCATGGC CGTGCGCTTC ATCGTCGAGG TGGCGTGGCA GGCGCATTTC
GTGAAGAACA TGTTCATCCA GCCCACCCCC GCCGAACAGG CCGTATTCGA ACCGGACTTC
GTGGTGTACG CCGCATCCAA GGCGAAGGTC GACGACTACC GCGAGCTGGG CCTGCATTCC
GAAACGTGCG TGGCATTCAA CATCACCAGC CGCGAGCAGG TCATCCTGAA CACCTGGTAT
GGCGGCGAGA TGAAAAAGGG CATGTTCTCG ATGATGAACT ATTACCTGCC GCTGCGGGGC
ATCGCCGCCA TGCACTGCTC CGCCAACACC GATCTGAACG GCGAAAACAC CGCCATCTTC
TTCGGGCTTT CCGGCACGGG CAAAACCACG CTGTCCACCG ACCCGAAACG CCTGCTCATC
GGCGACGACG AGCACGGCTG GGACGACAAC GGCGTGTTCA ATTTCGAGGG CGGATGCTAT
GCCAAAGTCA TCGACCTGGA CCAGGAGTCC GAACCCGATA TTTACAACGC CATCAGGCGA
AACGCCCTGA TGGAAAACGT CACCGTGGAC GCGAGCGGCC GCGTCGACTT CGCGGACAAA
TCCGTCACCG AGAACACCCG CGTTTCCTAC CCCATCGACC ACATCGAAAA CAACGTCAAG
AAGGTGCGCC CGATTTCCGC CGGACCCGAC GCGAACACGG TGGTCTTCTT GTCCGCGGAC
GCCTTCGGCG TGCTGCCTCC CGTGTCGATC CTCACGGATG ACCAGGCCAA ATACTACTTC
CTGTCAGGAT TCACGGCGAA GCTGGCCGGC ACCGAGCGCG GCATCGACAC GCCCACGCCC
ACCTTTTCGG CGTGCTTCGG CCAGGCGTTT TTGGAACTGC ATCCCACGAA ATACGCCGAT
GAGCTGGTAC GCAAGATGGA CAAGGCCGGC GCGCGGGCGT TTTTGGTTAA CACCGGCTGG
AACGGCACGG GCAAGCGCAT CTCGATCAAA GACACCCGCG GCATCATCGA CGCGTGCCTG
AACGGCGACG TGCTGAGCGC TCCGTCGAAG GTCATCCCCA TCTTCGGGCT GGAGGTTCCC
ACAGAACTGC CCGGTGTGGA CAGCGCAATC TTGGACCCGC GCGACACCTA TGCCGAAGCC
GCCGAATGGG ACGCCAAGGC CCGCAACCTG GCGAAGCTCT TCGTCGAGAA CTTCAAGAAG
TACGAAGGCA CCCCAGCCGG ACGCGCCCTT GCCTCCTCAG GTCCCGACCC TGAATAA
|
|---|
| Protein sequence | MTKLDLTRYG ITNASEIIHN PSYDFLRDEE LRSDLSGYEK GQLTCMDAVN VMTGVYTGRS
PKDKYLVADE NSRNTVWWTS DDFENDNHPM SPAVWDAVKR RALEQLSGKR LFVMDAFCGA
DEDTRMAVRF IVEVAWQAHF VKNMFIQPTP AEQAVFEPDF VVYAASKAKV DDYRELGLHS
ETCVAFNITS REQVILNTWY GGEMKKGMFS MMNYYLPLRG IAAMHCSANT DLNGENTAIF
FGLSGTGKTT LSTDPKRLLI GDDEHGWDDN GVFNFEGGCY AKVIDLDQES EPDIYNAIRR
NALMENVTVD ASGRVDFADK SVTENTRVSY PIDHIENNVK KVRPISAGPD ANTVVFLSAD
AFGVLPPVSI LTDDQAKYYF LSGFTAKLAG TERGIDTPTP TFSACFGQAF LELHPTKYAD
ELVRKMDKAG ARAFLVNTGW NGTGKRISIK DTRGIIDACL NGDVLSAPSK VIPIFGLEVP
TELPGVDSAI LDPRDTYAEA AEWDAKARNL AKLFVENFKK YEGTPAGRAL ASSGPDPE
|
|---|
| |