| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_01820 |
|---|
| Symbol | |
|---|
| ID | 8394074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 222845 |
|---|
| End bp | 225280 |
|---|
| Gene Length | 2436 bp |
|---|
| Protein Length | 811 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644984955 |
|---|
| Product | ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| Protein accession | YP_003142602 |
|---|
| Protein GI | 257062930 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAC CTTTGAGAAA GCGGCTTCCG CGCGAATTCA AAAACAACCT GGGGCGTTAC
CTGGGCATGA TTCTGCTGAT GGTCATGGCC ATCGCGCTGA CCTCGGGGTT CTTGGTGTCC
GCCACCAGCA TTCAGGTCAT CGACAGCCGC AGCCGCGACA CGTACAACGT GGAGGACGGC
AGGTTCACCA CGAACTTCGA GGCGGACGAC GAATCCATCG CCGCCGTCGA GGCGCTGGGC
GCAACCGTGT ACAAGCTGTT CTACGCCGAC ATGCCCCTGA CGGTTCCCGG TGACGACACC
GCCATCACCG TGCGCGTGTT CGAGAACCGA ACCGAGGTGG ACCTGCCCGC CTACATCGAA
GGTCAGGCCC CGGCTGCCGA CAACGAAATC GCCCTCAACA GGAACTTCTG CGACAACCTG
GATTTGGAGC TGGGCGACAC CGTCCAGGTG GCGGGGGAGG ACTTCGTGCT GGTGGGGAAG
GTGTCCCTGC CTGATCAGGT GACCACCTTC AGGCGCAACA CGGACTTCAT CTTCAACTCG
CTGCAGTTCT GCGTGGCCCA GGTCACGTCG GAAACCTACG AGCGCATAGC GGCGTCGGGA
AGCCAGTACA ACTACGCTTT CGTGCTGGAC GACCGCGACA TGGCGCTGGC CGACCGCATC
AGCTTCGAAT CCGACCTGAC CGAGGCGCTG TCCGACAACG GCGAGGTGTT GACCGACCTG
GTCGATTGGG AAGGCAACCA GGGCATCGTA TATGCCACAG ACGACGTCGA GGGCGACATC
CTTATGTGGG AAGTCCTGCT CATGCTGCTG ATTGTCATCA TGGCGTTCGT GTTCGTGGTG
CTGACCAACG CCAACATCGA AGAGGAGAGC TCGGTCATCG GCACGCTGCT GGCCAGCGGT
TACCGCAAGC GCGAGCTCAT CTTCCATTAC ATGACGCTGC CGCTGATAGT CGGCATTGTC
GGGTGCGTGG CGGGCACGGC GCTGGGCAGG CTGGTGTTCG TCGAACCCAT GAAGAACCTG
TATTACAACA GCTACTGCTT CCCGCCATTC GAGCAATATT GGAACACGAA GGTCTTCTTC
ATCACCTCGG TCGTGCCGTT CGTGCTGCTG GTGGGCATCA CCCTGGGCGG CCTGCTGAGC
AAGATGAACG CCACGCCGCT GCAGTTCCTC AGGCACGAGA TAGGCCGACG TTCCAAATCC
GGCGGCGTCA GGCTGCCCGA CTGGATTCCC TTCCCGGTTC GCTTCCGCCT GCGCGTGTTC
ACGAGGAACT GGACGCACTT TCTGACGTTG TTCTTCGGCA TCGCCTTCGG CAGCCTGTTG
CTGCTGTTCG GGTTCTGCAT GATGCCGTTG GTCCAACACA ACGCGGACAC CATGGCCGAA
AGCGTGGTGG CCGAGCATGT GTACACGCTG AAGGCTCCGT TGGAAATCGA CGGGACCGAC
ATGCAGCGCG AATCTTTCGA GGCGGCGGAA ACGCTGGCCA CCACCGAGGA CCTGTCCGAG
CTGAACCCCG ACAACATGCT GTCCATGCTG CTGCTGGCCC AGGAGGTGGA CGAGGACGCC
AATCCCGTGA ACATCTATGA GAACAGCCAG GAGGCCATCG ATCAGGCCGA AAAGTTCGCC
GCAACGACGC TGGAGGTCGA CCGTCGCATG GGCGGCCAGA AGGAGGAGAC CACGGTCTAC
GGCGTCCAGC CCGAATCGCG GTACTGGGAT TTCGTGAAGG TCTCGTCCGA CGGCATCGAC
GTGGGCGCCG GCCTGGCGAA AAAGTGCGGG CTGGAAGAAG GCAGCACCTA CGAGTTCTAC
GACAAGTACG AGGACAAAAG CTATTCGTTT ACAGTGGAGC ACATCGTGGG CAGCGCCAGC
GACATGGCCA CGTACATGCG GATTGACAGC TTCAACCAGG TGTTCGACCA GGAGCCCGAC
AACTTCAACG GCTACGCCTC CGACCTGCCG CTGAGCTTCG ATGACCGTTA CCTGGTGAAC
GACCTGACGC CCGAATCGAT GCAGGGCGTC GCCGACCAGA TGAGCGACTC CATGGGCAGC
ATCGCCAACA TGATGATTTT CGTGGCCGTG CCCATCTACC TGGTTCTGAT CTACCTGCTG
ACCAAGACGG TCATCGACCG CAACGCCCGC GCCATTTCGT ACATGAAGGT GTTCGGCTAC
CACGACCGCG AGGTGTCGAA GCTGTACGTG CGTTCCATCA CCGTGACGGT GCTTGTGTCG
CTGGTGCTGT GCATACCGCT GCTGATCTGG GCGTTGTCGC TGCTGCTGGA GTTCGTGTTC
ATGTCCTACC CCGGGAACCT GGAGATGTAC ATCCAGCCGC TGGCGGTAGG CAAGGAGCTC
GCCCTGGGCG TGGTGACCTA TGCGGTGGTG GCGTTCCTGC ATGTGCGGGC CATTCGCAAG
GTGCCGCTGG CCCTGGCCAT GAAGGCGGCG GAATAA
|
|---|
| Protein sequence | MATPLRKRLP REFKNNLGRY LGMILLMVMA IALTSGFLVS ATSIQVIDSR SRDTYNVEDG
RFTTNFEADD ESIAAVEALG ATVYKLFYAD MPLTVPGDDT AITVRVFENR TEVDLPAYIE
GQAPAADNEI ALNRNFCDNL DLELGDTVQV AGEDFVLVGK VSLPDQVTTF RRNTDFIFNS
LQFCVAQVTS ETYERIAASG SQYNYAFVLD DRDMALADRI SFESDLTEAL SDNGEVLTDL
VDWEGNQGIV YATDDVEGDI LMWEVLLMLL IVIMAFVFVV LTNANIEEES SVIGTLLASG
YRKRELIFHY MTLPLIVGIV GCVAGTALGR LVFVEPMKNL YYNSYCFPPF EQYWNTKVFF
ITSVVPFVLL VGITLGGLLS KMNATPLQFL RHEIGRRSKS GGVRLPDWIP FPVRFRLRVF
TRNWTHFLTL FFGIAFGSLL LLFGFCMMPL VQHNADTMAE SVVAEHVYTL KAPLEIDGTD
MQRESFEAAE TLATTEDLSE LNPDNMLSML LLAQEVDEDA NPVNIYENSQ EAIDQAEKFA
ATTLEVDRRM GGQKEETTVY GVQPESRYWD FVKVSSDGID VGAGLAKKCG LEEGSTYEFY
DKYEDKSYSF TVEHIVGSAS DMATYMRIDS FNQVFDQEPD NFNGYASDLP LSFDDRYLVN
DLTPESMQGV ADQMSDSMGS IANMMIFVAV PIYLVLIYLL TKTVIDRNAR AISYMKVFGY
HDREVSKLYV RSITVTVLVS LVLCIPLLIW ALSLLLEFVF MSYPGNLEMY IQPLAVGKEL
ALGVVTYAVV AFLHVRAIRK VPLALAMKAA E
|
|---|
| |