Gene Coch_2134 details

Gene Information

• Locus tag: Coch_2134
• Symbol: smpB
• ID: 8368595
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 2553737
• End bp: 2554192
• Gene Length: 456 bp
• Protein Length: 151 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 644984588
• Product: SsrA-binding protein
• Protein accession: YP_003142239
• Protein GI: 256820960
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTCAGA AAACAGTACA AATACTCAAC AAACGGGCAA AATTTGAATA TGAAATCCTC 
GACAAATACA CGGCGGGGAT TGTGCTCGTG GGTACCGAAA TAAAGTCTAT ACGAATGGGA 
AAAGCCTCGA TAGCTGAGAG TTTTTGCGAG TTTAACGATA AAGGAGAGCT TTTCGTAATC 
AACTCTACCA TTGAAGCATA TGACTTTGGC ACCTATTACA ACCACCGCCC AAAAAGTGAA 
CGCAAACTGC TTTTGCAGAA AAAAGAACTT CGCAAACTCA ATAAAGAAGT GAAAAATAGC 
GGACTTACCA TCGTACCTCT CAAACTCTTT ATTAACGAAA AAGGCTTGGC TAAAATGGAT 
ATAGCCTTAG TACGCGGTAA GAAATTGTAC GATAAACGCG AAACTATTAA AGACCGTGAT 
AACAAGAGAA ACTTGGATAG GCTGATGAAG AAGTAA 

 

Protein sequence

MIQKTVQILN KRAKFEYEIL DKYTAGIVLV GTEIKSIRMG KASIAESFCE FNDKGELFVI 
NSTIEAYDFG TYYNHRPKSE RKLLLQKKEL RKLNKEVKNS GLTIVPLKLF INEKGLAKMD 
IALVRGKKLY DKRETIKDRD NKRNLDRLMK K