| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1973 |
|---|
| Symbol | |
|---|
| ID | 8368431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 2365078 |
|---|
| End bp | 2366754 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644984424 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_003142078 |
|---|
| Protein GI | 256820799 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase
[TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.15148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAACTC CAGAAGAACT TAGAGAAGGT CGTATCTTGC TTATCGATAA GCCCCTGCAA
TGGTCGTCGT TTCAAGCAGT GAACAAAATC AAATGGGCAA TACTCAAACA CTATAAGCTC
AAGAAGATAA AGATAGGGCA CGCAGGAACA TTAGACCCGC TTGCCTCTGG TTTATTGGTG
ATTTGTACGG GCAAATTTAC TAAGAAGATT ACCGAAATAC AAGACGCTGT AAAAACTTAT
ACAGGCACTA TTACCGTAGG GGCTACTACT CCTTCCTACG ATAAGGAAAC CGAAATTAAT
GCCCACTACC CTACTGACCA TATCACTCCT GAACTGATAG AACAAGTGCG AATGCAGTTT
ATAGGGGAAC TCACGCAAAC GCCTCCTGTA TTTTCGGCTA TCAAGAAAGA AGGCAAACGG
CTCTACGAAT TTGCCCGCGA CGGCAAAGAA ATAGAAGTTC CTCAGCGCAC TATCTATATT
TACAGTTTCA ATATAGATGC AAGTCAGTTT CCTAAGTTGC AATTTGAGGT GGTATGTAGC
AAAGGCACCT ACATACGCTC CTTGGCAAAC GACTTTGGTA AAGCCTTAGG ATCTGGTGGC
TATCTATCTG CATTGCGACG CACTAAGATA GGTGATTTCT CGGTAAATGA TGCCTTAACG
CCTGATGAAT TTATAAACAT ACATATTCCA AAAATGCAAA CAAAACCTAT TATTCTCACT
ACTGTATTCG AGCGATTTAT CGATAAGAAT AAAACAACTC TTAATGACCA TTTCGCTCGA
AAAGAATCTA CTTTGAACAC ACAAAACAAT AGGAAAAAAT CTATTAATGA AGTGTATGAA
GAGCGAGAGC GAGAACACCT TAACAAACAA CAAAAACAGC GACATACTTC CGACCTTAAT
ATAGAAGCCA TTTTTCCTCG AAAAAAGAAA AAAAAGACCT CAGGAATCAA ATATGAGTTT
CGCTACTTTC TATCGATGTT TTCAAATACT GATAAGGCAA TTATGCTTAC TTTACTGATA
CTTTTCGGTA CGATAGTAAC CCTTATGGTG ATACAACTTA GCAGTAGAGA GAAAGAAATA
ATGATTGAAA TGGCACTCAC TCCAGATGAT TTACCTTATG AACCTCCAAA ATTAGAGGAA
CAAACTGAAG CGCCTGATCT TTCTCAAGCT ATGAATGCGA AACTGACTAC TAATGCTTAT
AATCAAGCCG ATGCTGACTT ACGTCATACT GAGAATTTTA AAACTTTAGA CGAAATAATG
GCAGAGCGTG CTTCTAAAGA GATGGAAAGT GCTAAAGAAG ACTTGGTGAG TAATAATAAA
ATGTCGTCTA ACTTAGTAAT ATCGGACGAT AATACTCTTC AAAAAACAAC TAAAATTTCA
TCTGATAATA AAGTAAATAA GAATACTTTA GTAAAATATG CCTTATCTGG CAGGACAGGA
AATATACCTA ACCCTGTATT TACTTGTGAA AAAGAAGGGC AAGTAGTGAT TATTATTACA
GTTGATGAAG CAGGAAGAGT TATTAGAACA GCTCTTGACA AAATGAATTC AACTACCAAT
GATGATTGCC TTATAGAAAA CTCATTACTA TATGCTAGCA GAGCCAGATT TAATGCTGTA
ACAGGCAAAA AAGAGCAAAC AGGAACTATT ACTTATATTT TTCAAAGTAA ACGATAG
|
|---|
| Protein sequence | MITPEELREG RILLIDKPLQ WSSFQAVNKI KWAILKHYKL KKIKIGHAGT LDPLASGLLV
ICTGKFTKKI TEIQDAVKTY TGTITVGATT PSYDKETEIN AHYPTDHITP ELIEQVRMQF
IGELTQTPPV FSAIKKEGKR LYEFARDGKE IEVPQRTIYI YSFNIDASQF PKLQFEVVCS
KGTYIRSLAN DFGKALGSGG YLSALRRTKI GDFSVNDALT PDEFINIHIP KMQTKPIILT
TVFERFIDKN KTTLNDHFAR KESTLNTQNN RKKSINEVYE EREREHLNKQ QKQRHTSDLN
IEAIFPRKKK KKTSGIKYEF RYFLSMFSNT DKAIMLTLLI LFGTIVTLMV IQLSSREKEI
MIEMALTPDD LPYEPPKLEE QTEAPDLSQA MNAKLTTNAY NQADADLRHT ENFKTLDEIM
AERASKEMES AKEDLVSNNK MSSNLVISDD NTLQKTTKIS SDNKVNKNTL VKYALSGRTG
NIPNPVFTCE KEGQVVIIIT VDEAGRVIRT ALDKMNSTTN DDCLIENSLL YASRARFNAV
TGKKEQTGTI TYIFQSKR
|
|---|
| |