Gene Coch_1964 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1964 
Symbol 
ID8368422 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp2358949 
End bp2359638 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content34% 
IMG OID644984415 
Productputative PAS/PAC sensor protein 
Protein accessionYP_003142069 
Protein GI256820790 
COG category 
COG ID 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.705516 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGAAC TAATTACTAG ACCTATACCT ATTGATGAAG AAGTAGTGTG GGATAAAACA 
AAAACTATTA TCAGTACTAC TGATAAGTTG GGTGCTATTA CTGACGTAAA TCAAACATTT 
ATAGACGTTT GTGGTTATCC TGCGGTTGAA TTATTAGGAA AACCACATAG CATCATTCGT 
CACCCCGATA TGCCTAAAAT CATATTTAAG ATTACTTGGG ATAATATTTT GGCGGGGAGA 
AACTTTCACG CTATTATTAA AAACTTAGCT AAATCGGGTA AGTATTATTG GGTAATTACC 
GATTTTGAAG TAGGCAGGAA TATTATTGGG GATGTTGTTA CTATTATGGC GCGTCAGCAT 
TCAGTACCTA AGTATGTAAT TACAGAGCAT ATTGAGCCTT TATATCAAAC GCTCCTTAAA 
CTTGAAAAAA TAGGAGATAT GGAGCTCAGT AATCGTTATT TTAAGGGCTT TTTAGAAAAA 
CAAGGCAAAT CATATATTGA ATATATTATG GATATTATGG ACGAAAGCAA GCGAGAAATT 
CACTTTGATC CTATCCCTAA TATGCCTCAC ACTGATACTA ACATTGGAGA CTATGAAATT 
TCTGATGATA TATTTAGTGA AGAACATCAC GAAGAAGAAA CTATGATGCA ACGCAAGAGT 
TTCTTTGCAA AATTATTTTC TACGAATTAG
 
Protein sequence
MSELITRPIP IDEEVVWDKT KTIISTTDKL GAITDVNQTF IDVCGYPAVE LLGKPHSIIR 
HPDMPKIIFK ITWDNILAGR NFHAIIKNLA KSGKYYWVIT DFEVGRNIIG DVVTIMARQH 
SVPKYVITEH IEPLYQTLLK LEKIGDMELS NRYFKGFLEK QGKSYIEYIM DIMDESKREI 
HFDPIPNMPH TDTNIGDYEI SDDIFSEEHH EEETMMQRKS FFAKLFSTN