| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1933 |
|---|
| Symbol | truA |
|---|
| ID | 8368391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 2317834 |
|---|
| End bp | 2318586 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644984385 |
|---|
| Product | tRNA pseudouridine synthase A |
|---|
| Protein accession | YP_003142039 |
|---|
| Protein GI | 256820760 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0101] Pseudouridylate synthase |
|---|
| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTATT TTATAGAACT TTCTTTCTTT GGTAAAAACT ATTACGGTTG GCAATTCCAG
CCCAAAGCTA TTTCAGTGCA AGAAGTTTTA CAGAAGGCTC TTTCTACTCT TTTGCGAACG
CCTATAGAAG TTGTGGGAGC AGGTCGCACT GATAGTGGTG TGCACGCTTT GCAGATGTAT
GCTCACTTTG ATGTGACAGA AGCGTTGCCC GCTAATCTGG TTCACAAGTT AAATGCTTTT
CTTCCAAAAG ATATAGCTGT TCATCATATA TATGAAGTAC AGCCTAATGC CCACGCCCGT
TTTGACGCTT TGAAACGCAC TTATCAGTAC CATATTAGTA CTCAAAAAGA TGCTTTTGCT
TACGATTATG CGATGGCACT TACTCTTCCG TTAAATGTAG CGCTTATGAA TGAAGCGGCT
CAAATACTTT TTGATTATAC TGATTTTCAG TGCTTCTCTA AAACACATAC CGATGTAAAG
ACATATAATT GCAAAATATA CGAAGCGCAT TGGGATAAGG TGGAGAACCA ACTCATTTTT
ACTATTACTG CCGACCGTTT CTTGCGCAAT ATGGTACGGG CGATTGTAGG AACACTTATA
GATGTAGGCT TACAGAAACT TTCGCTTACA GATTTTGAAG ATATTATCCT CAGTAAGAAA
CGCAGTAAAG CAGGAGCATC GGTTCCCGCT TGTGGGTTAT ATCTCACTCA TATAGAATAC
CCCGAAAGTC TCTTTGTTGA AAAAAAGGAT TAA
|
|---|
| Protein sequence | MRYFIELSFF GKNYYGWQFQ PKAISVQEVL QKALSTLLRT PIEVVGAGRT DSGVHALQMY
AHFDVTEALP ANLVHKLNAF LPKDIAVHHI YEVQPNAHAR FDALKRTYQY HISTQKDAFA
YDYAMALTLP LNVALMNEAA QILFDYTDFQ CFSKTHTDVK TYNCKIYEAH WDKVENQLIF
TITADRFLRN MVRAIVGTLI DVGLQKLSLT DFEDIILSKK RSKAGASVPA CGLYLTHIEY
PESLFVEKKD
|
|---|
| |