Gene Coch_1836 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1836 
Symbol 
ID8368284 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp2194168 
End bp2194794 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content41% 
IMG OID644984278 
ProductRhomboid family protein 
Protein accessionYP_003141942 
Protein GI256820663 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.76231 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATATCA CTTTTATTAT CATTCTTCTT GCGACTATAG CAATGAGTTA TTATGGATTT 
AAGAATCCTA CTTTTTTCAA CCGTTATAAG TTCAATGTAG GAGCAGTGCA AAAGGGCGAT 
TATGTGCGAT TGGTATCCTC AGGCTTCTTG CACGCCAACT GGGAACACCT CATTTTTAAT 
ATGATTTCAC TCTACTTCTT TCAAGATGTG ATTATCGGTT CTATGGGGAA CCTAATGTTC 
TTGCTTATCT ATTTTGGTTC AATGCTACTG GGGAGTGTGT TCAGTTTGTA CATTTACAAA 
AAACAGCCCT ATTACTCCGC CATAGGGGCT TCGGGAGCTG TATCGGGGAT TATCTTTGCA 
GCTATTGCTC TATATCCTAC AGCGTTAAGT GTAAACTTCT TACCGGGTTG GCTCTTTGGA 
GCATTATACT TTGGGTATTC GGTATTTATG ATGTTCAACC CACAACAAGG AGACAATTTA 
GGGCACGCAG CTCATTTAGG TGGGGCACTC TTTGGCTTGG CAGTAGTAAT AATCTACGCT 
CCTGAGGTAG TGATACGCCA CGCTTTCTAT TTGGGAGTAA TGGCATTGCC TTTGGGCTAT 
ATGGGAGTGC GGTTGCTGAA GAAATGA
 
Protein sequence
MNITFIIILL ATIAMSYYGF KNPTFFNRYK FNVGAVQKGD YVRLVSSGFL HANWEHLIFN 
MISLYFFQDV IIGSMGNLMF LLIYFGSMLL GSVFSLYIYK KQPYYSAIGA SGAVSGIIFA 
AIALYPTALS VNFLPGWLFG ALYFGYSVFM MFNPQQGDNL GHAAHLGGAL FGLAVVIIYA 
PEVVIRHAFY LGVMALPLGY MGVRLLKK