Gene Coch_1585 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1585 
Symbol 
ID8368030 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp1890075 
End bp1891175 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content43% 
IMG OID644984024 
Product3-dehydroquinate synthase 
Protein accessionYP_003141691 
Protein GI256820412 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0337] 3-dehydroquinate synthetase 
TIGRFAM ID[TIGR01357] 3-dehydroquinate synthase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGCAA ATGTTATCAG AGCTGGAAAT TACAACGTTT ATTTTAATGA GGAAGGAACT 
GATTTTATCA ATCGAATGGT TGCGGAAAAA CGTCCTTCGA AGCTGTTTTT GTTGGTGGAC 
AGTCATACCA ATGAAAAATG TTTGCCTGTG TTTTTACCTA CTCTCATTAC TGATATTCCG 
ATAGAAATTA TAGAAATAGA AGCGGGAGAA CTGCATAAAA ACCTCGATAC TTGTACGCAA 
GTGTGGCACG CACTTTCAGA ATTAGGAGCC GACCGCAAGA GCTTGCTCAT AAACGTAGGA 
GGAGGAGTGG TAACCGATTT AGGAGGCTTT GTGGCTTCTA CCTATATGCG CGGAGTGCCC 
TTTATTAATG TGCCGACGAG TTTACTGGCA ATGGTAGATG CCTCGGTAGG GGGGAAGACG 
GGGGTGGATT TAGGTCCTTT GAAAAATCTT GTAGGAGTGA TAAACAATCC GTTGGGGGTG 
GTGATAGACT CGCAATATTT AGGAACGTTA CCTGCTGAGG AATTGCGTAG CGGAATGGCA 
GAGATGTTTA AGCACGGACT TATTCGCTCG GAGGCTTATT GGAACAAAAT GTGTGATTTG 
AGAAGCCTTT CGTTAGCTGA TTTAGACAGT CTTATTCACG AATCGGTGGT GATAAAGAAC 
GAGGTGGTAA TGCAAGACCC GAAAGAATGT GGATTGAGAA AAATACTGAA TTACGGTCAT 
ACGCTGGGGC ACGCTATCGA GTCGTATTGC TTGGAAAACC CCAATCGCCA ATGTTTGTTG 
CACGGAGAGG CTATTGCGAT AGGAATAGTG TTGGCTACTT ACCTATCGGT GAAAAAGTTA 
GGCTTTCCTA AGGGCAAATG CGATAAGGTG AAAAGCGTGT TGGGAGAGTA TTTCAGCAAA 
CAAACTTTTC ATAAAGAGGA TATTGAGGAT ATTTGTGAGT TGATGCGTTT TGACAAGAAG 
AATGTAGCGG GCAGAGTACA CTTTGTGCTT TTAGAGGAGA TAGGTAAGCC TAAAACGGAT 
TGTGTAGTGC CTGAGGAAGA GATTTACGAG GCGTTTGAGT ACTATAGCGA GTCGCACGGG 
GAGATAAAAG GTAAGAGATA A
 
Protein sequence
MEANVIRAGN YNVYFNEEGT DFINRMVAEK RPSKLFLLVD SHTNEKCLPV FLPTLITDIP 
IEIIEIEAGE LHKNLDTCTQ VWHALSELGA DRKSLLINVG GGVVTDLGGF VASTYMRGVP 
FINVPTSLLA MVDASVGGKT GVDLGPLKNL VGVINNPLGV VIDSQYLGTL PAEELRSGMA 
EMFKHGLIRS EAYWNKMCDL RSLSLADLDS LIHESVVIKN EVVMQDPKEC GLRKILNYGH 
TLGHAIESYC LENPNRQCLL HGEAIAIGIV LATYLSVKKL GFPKGKCDKV KSVLGEYFSK 
QTFHKEDIED ICELMRFDKK NVAGRVHFVL LEEIGKPKTD CVVPEEEIYE AFEYYSESHG 
EIKGKR