| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1540 |
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| Symbol | |
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| ID | 8367984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 1828437 |
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| End bp | 1831985 |
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| Gene Length | 3549 bp |
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| Protein Length | 1182 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644983979 |
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| Product | SMC domain protein |
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| Protein accession | YP_003141646 |
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| Protein GI | 256820367 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATAC TTTCGGTCTC TCTTCATAAT ATCGCTTCTA TAGAAGGTCC CTTTACGCTT
AATTTGGAAG CTGAACCCCT TAAATCGGTG GGGTTATTTG CTATTACAGG AGCGACAGGG
GCAGGCAAAT CTACCATTTT AGATGCTATT TGCCTTGCGC TTTACAACGA TACTCCTCGA
TTGGCAACTA CAAAAAACTC GGTTGCTATT GCTGACGGCT CGGCTGAGGT GCAGGTGAAT
AATGTGAAGA ACCTCTTGCG CAAAGGGGCG ATTTCGGGCT ATGCCAAAGT GGTATTTCAG
GCGGTAGACG GCAAGACTTA TGAAGCGGAA TGGCAGGTAC GCAGAGCCTA TAACAAACTT
TCGGGGGCAA TTCAGCCTGA AACTTTGCAA CTTACTTGCC TGACGGATAA CCAACTGATT
GCTGAGAACC GCAAGACATT GGTGCTCGAA AAGATAAAGG AATGCGTAGG CTTGACCTTT
GACGAGTTTA CCAAATCGGT AATTTTGGCA CAAGGAGACT TTACGTCGTT CTTAAAAGCG
AATGATGATA AGCGGTCGGA TATTTTAGAA AAACTCACAG GTACGGAGAT TTACACACGC
ATTTCTAAGC AAGTGTACGA ACTCAACAAG CAACATAAAA ACGAACTCCA ACTCTTAGAA
AAACAGCTTG AAAACATCGT TTTTTTAACG GAAGAAGAAC GCAGTGCCTT AACCGAGCAA
CTTACAGCCG ATGAAGAGAG GTTGAAAACC TTACAAGCCT CGCTCGCTAC TTTAAAAGAA
CAACAGCAGT GGTTTGACAA TCAGAAGTTG TACACTCAGC AATGGCAAGA AGCTATTGCC
AATAAAGAAA AAGCCGAACA AGAGAAAACC TCGCAAGCGG AACGTTTTGG AGAGCTTGCT
ATCATAGAGC AATTACAAGC CATAAAAGGG GATATCCTCA CCGAGCAAAG GGAAAAAGAA
CTATTAGCAA CTGCTCAGCA ACATTTGAAA GAAGCTACTG CCGAAAAAGA ACGGCTCACA
GCTAATAAGG CTAAGGTATC CGAGCAAAAA TTGCTAACCG AAAACGATTT GGCTACTGCC
AAAAAGGCTT ATGAAATTGC CAAACCTTTT ATTGCCAGAG CAAAGGAATT GGACGTACGA
CTTGCAGAAC TAACGCAGAT TTTTGAGCAA AAACAGCAGC AGCAAGAGGC GAAAGAGACT
GCTTTGCAAG CTAAAAAAGA GTCGCTTGAA AAAGTAACTG AACATATACA GAAAGGGGAG
AGGTACATTC AGCAAGAAGA GCAGTGGCTC AACACTCACC CTGATGAAGC GCAGTTGTAC
CGCAATGCGT TGTGGCTCAA ACAGCTTGTG GAAGAACAGC AACAACTCAA TGAAAAACTA
ACTGCCCATA GCCAAGCAGA AGAACGCCTT AGACAACAAC TCAATGAGCT GAAAGCACAA
TACCCTATAC AGGCACTCCC TTCAACTGAT ATAGAGATGC TTGCTAAACA GCAGAAGGCT
TATCTCACCG CCTTGCAAGT GTATCAGGCG GATAGAGAGA TTGCCAAACA TATCAAGCAA
TACACTGACG CAAAGGTTCA GAGAGAAGCG CTCTTACAAG AGATGCAAAA CACCCAAAGC
CAAATATTGG AAACATTGCA ACGTTTAAAA ACTGAGAAGA TAGCCACCCA AATAGCTTGT
GATACAGCGG AACGCATTTA CCAAAGGGCA CAAATAGAAA ATACCAAAGA TGTAGCGTTT
TTGAGAGAAC ATTTGGTGGA AGGAGAAGCC TGCCCCGTAT GTGGTTCGGT ACACCACCCC
AATGCTCATA AGGCAGTAGC TGAACACCTG ATAGATACAG TGCAACAAGA ATTTCTAACG
GCTAAAAAAC AATTAGAAAC GCTTACCAAA GAGGTTATCA CCAAAGAAAC GGAGCTCAAA
GAACTGCAAA AGCGTATAGA GAGTCAGACA GCAGAAAACG CAGAGCGTAC GGATTTATGG
CAACAAGAGA GCGAACGCTT GTCGCAATCA GTGTATTATA CGACCTATCC TTCTGTGAAA
ATAGAAGAAT ATATCACGGA TAAGATAGCA AAAACAGAAC ATCTTTTAGC GGAAAACGAG
CGTCTTTTTG AAGTCCTCAA CCGACTCAAA TCGCTTACTG ATGAGCTGAA TACCCTTGCG
AAAGACGTTG AAAATTACAA GCAACAACGG CAAAAATACA GTCAGCAATT ACAGAGCTTA
CAACTTTCGG ACGCTTGGCT CAACCTTTGG AAAACCGATA TTGTGCAATT TCAAACCCAA
ATCACCACTG CTAAAACCGA CTGGGAAGCG CATTCGGCTT GTATCGAGAA ATACAAAAAG
CGCCTTGCTG AACTCACCCA AGAGCGCACC GAGCTCGCCT CCTCACAACA AGTACTCCGT
CAAGAGCTCA CCGAATTGAC AACGACAATC GATAAAGAGC AAGCGCAATT GCAAACGCTG
AAAGAAGAAC GTGCGGGATT GTTAGAAGGA AAATCGGTTC AAGTAATAGA AGAGAGTTAC
CAACAGCATT TAGAGCAATT AACAACTCTT TTAGAGCAAA CGCAACAGCA ATATAACGCT
ATTTTATTGG AGATGACGGC TAACGAAAAA ACCTTAGAGA CCTTAGCAAT GCAACAACAG
CAATCGCAAG CTCATATAGC CGAGTCAACT CACAAAATAG AAGAATGGCT TACAGCCTAC
AAGCCTGCTC AAATAGAGCA TATAAGAAGG AAAATGCAAG AGTGGGCGAA TCGTTCTCAC
GAATGGCTAC AATCAGAGCG CCAAGCCCTT CAATCCTTAA ATGACCGCAT TGCACAATAC
AATACCATTG CGAATGAAAA ACAGCAAGCG CTTGAAACAC TAAAAGAAAA AAGACCACTC
AACTTTACAG AAGAAGATAT CGTCCAACAG TTGGCTGAAC AGACAGCAGA AGAAGATACC
TTTCGCGATA CGGTAGTCAC TCAAAAGAGT CGGCTTTTAA ATGATGAGCA ACAGCGAGCA
ATAGCAGTTG AGTTGCATAC AGCCAAAGAA GAAAAGGAAA AACTCGCTCA TCGCTGGAGC
TTGCTCAACG ACCTGATAGG AAGTAGTACA GGTAATGCGT TTCGCAAATA CGCGCAGGAG
TACACTTTGG ATATGCTCTT GCAATATGCT AATGTGCAGA TGCGCTACCT CAATAGGCGC
TACACCCTGC AACGCATTCC TAACTCTCTT AGTCTGCAAG TGATAGACAA CGATATGGGA
GCTGAGGTAC GGTCGGTATA CTCACTTTCA GGAGGAGAAT CGTTTTTGGT ATCCTTGGCT
TTAGCTTTGG CACTTTCGTC TCTTTCATCT ACCAAAATGA ACGTAGAAAC CCTTTTTATA
GACGAAGGTT TTGGTTCTTT AGACTCTGAG ACACTTTCAG TAGCCTTAGA TGCCTTAGAG
AGTTTGCAAA ATCAAGGGAA GAAAGTGGGA GTTATCTCTC ACGTACAGGA GATGGTAGAG
CGTATTGCTG TGAAAGTAGT GGTACAGAAG GAAGGTAATG GAAAGAGTAA GATAGTGGTT
AGTAATTGA
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| Protein sequence | MKILSVSLHN IASIEGPFTL NLEAEPLKSV GLFAITGATG AGKSTILDAI CLALYNDTPR
LATTKNSVAI ADGSAEVQVN NVKNLLRKGA ISGYAKVVFQ AVDGKTYEAE WQVRRAYNKL
SGAIQPETLQ LTCLTDNQLI AENRKTLVLE KIKECVGLTF DEFTKSVILA QGDFTSFLKA
NDDKRSDILE KLTGTEIYTR ISKQVYELNK QHKNELQLLE KQLENIVFLT EEERSALTEQ
LTADEERLKT LQASLATLKE QQQWFDNQKL YTQQWQEAIA NKEKAEQEKT SQAERFGELA
IIEQLQAIKG DILTEQREKE LLATAQQHLK EATAEKERLT ANKAKVSEQK LLTENDLATA
KKAYEIAKPF IARAKELDVR LAELTQIFEQ KQQQQEAKET ALQAKKESLE KVTEHIQKGE
RYIQQEEQWL NTHPDEAQLY RNALWLKQLV EEQQQLNEKL TAHSQAEERL RQQLNELKAQ
YPIQALPSTD IEMLAKQQKA YLTALQVYQA DREIAKHIKQ YTDAKVQREA LLQEMQNTQS
QILETLQRLK TEKIATQIAC DTAERIYQRA QIENTKDVAF LREHLVEGEA CPVCGSVHHP
NAHKAVAEHL IDTVQQEFLT AKKQLETLTK EVITKETELK ELQKRIESQT AENAERTDLW
QQESERLSQS VYYTTYPSVK IEEYITDKIA KTEHLLAENE RLFEVLNRLK SLTDELNTLA
KDVENYKQQR QKYSQQLQSL QLSDAWLNLW KTDIVQFQTQ ITTAKTDWEA HSACIEKYKK
RLAELTQERT ELASSQQVLR QELTELTTTI DKEQAQLQTL KEERAGLLEG KSVQVIEESY
QQHLEQLTTL LEQTQQQYNA ILLEMTANEK TLETLAMQQQ QSQAHIAEST HKIEEWLTAY
KPAQIEHIRR KMQEWANRSH EWLQSERQAL QSLNDRIAQY NTIANEKQQA LETLKEKRPL
NFTEEDIVQQ LAEQTAEEDT FRDTVVTQKS RLLNDEQQRA IAVELHTAKE EKEKLAHRWS
LLNDLIGSST GNAFRKYAQE YTLDMLLQYA NVQMRYLNRR YTLQRIPNSL SLQVIDNDMG
AEVRSVYSLS GGESFLVSLA LALALSSLSS TKMNVETLFI DEGFGSLDSE TLSVALDALE
SLQNQGKKVG VISHVQEMVE RIAVKVVVQK EGNGKSKIVV SN
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